Hb_006890_050

Information

Type transcription factor
Description TF Family: TCP
Location Contig6890: 147204-148519
Sequence    

Annotation

kegg
ID pop:POPTR_0015s03140g
description POPTRDRAFT_1100821; hypothetical protein
nr
ID XP_012093047.1
description PREDICTED: transcription factor CYCLOIDEA [Jatropha curcas]
swissprot
ID A1YKT1
description Transcription factor TCP18 OS=Arabidopsis thaliana GN=TCP18 PE=2 SV=1
trembl
ID B9IDZ9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s03140g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54155: 146895-147145 , PASA_asmbl_54158: 147880-148632
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006890_050 0.0 transcription factor TF Family: TCP PREDICTED: transcription factor CYCLOIDEA [Jatropha curcas]
2 Hb_002639_120 0.0864366082 - - unnamed protein product [Vitis vinifera]
3 Hb_007885_120 0.0952255976 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]
4 Hb_000840_220 0.1045458454 - - PREDICTED: RING-H2 finger protein ATL78-like [Jatropha curcas]
5 Hb_006816_540 0.1064155031 - - PREDICTED: bidirectional sugar transporter SWEET16-like [Jatropha curcas]
6 Hb_000702_040 0.1073871908 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
7 Hb_001227_010 0.1092100972 transcription factor TF Family: TCP hypothetical protein POPTR_0015s03140g [Populus trichocarpa]
8 Hb_001610_050 0.1105414776 - - PREDICTED: subtilisin-like protease-like [Solanum tuberosum]
9 Hb_021443_020 0.1146173705 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
10 Hb_005054_010 0.1178341394 - - amino acid transporter, putative [Ricinus communis]
11 Hb_000563_570 0.1181984492 - - hypothetical protein JCGZ_18895 [Jatropha curcas]
12 Hb_000286_210 0.1251783618 - - hypothetical protein EUGRSUZ_C00018 [Eucalyptus grandis]
13 Hb_001318_180 0.1266128967 - - PREDICTED: protein NIM1-INTERACTING 1 [Jatropha curcas]
14 Hb_151616_010 0.1305825783 - - -
15 Hb_004007_190 0.1317622858 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein AZF2-like [Jatropha curcas]
16 Hb_035006_010 0.1329529691 - - hypothetical protein POPTR_0017s11350g [Populus trichocarpa]
17 Hb_003012_010 0.1384648024 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002025_120 0.1398766476 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105634212 [Jatropha curcas]
19 Hb_003939_090 0.1419131564 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
20 Hb_066350_010 0.1426989967 - - somatic embryogenesis receptor-like kinase 4, partial [Rosa hybrid cultivar]

Gene co-expression network

sample Hb_006890_050 Hb_006890_050 Hb_002639_120 Hb_002639_120 Hb_006890_050--Hb_002639_120 Hb_007885_120 Hb_007885_120 Hb_006890_050--Hb_007885_120 Hb_000840_220 Hb_000840_220 Hb_006890_050--Hb_000840_220 Hb_006816_540 Hb_006816_540 Hb_006890_050--Hb_006816_540 Hb_000702_040 Hb_000702_040 Hb_006890_050--Hb_000702_040 Hb_001227_010 Hb_001227_010 Hb_006890_050--Hb_001227_010 Hb_151616_010 Hb_151616_010 Hb_002639_120--Hb_151616_010 Hb_002025_120 Hb_002025_120 Hb_002639_120--Hb_002025_120 Hb_002639_120--Hb_001227_010 Hb_000286_210 Hb_000286_210 Hb_002639_120--Hb_000286_210 Hb_002639_120--Hb_000702_040 Hb_007885_120--Hb_006816_540 Hb_005054_010 Hb_005054_010 Hb_007885_120--Hb_005054_010 Hb_003031_070 Hb_003031_070 Hb_007885_120--Hb_003031_070 Hb_009787_020 Hb_009787_020 Hb_007885_120--Hb_009787_020 Hb_007885_120--Hb_002639_120 Hb_000563_570 Hb_000563_570 Hb_000840_220--Hb_000563_570 Hb_001013_060 Hb_001013_060 Hb_000840_220--Hb_001013_060 Hb_000705_070 Hb_000705_070 Hb_000840_220--Hb_000705_070 Hb_005900_020 Hb_005900_020 Hb_000840_220--Hb_005900_020 Hb_003582_010 Hb_003582_010 Hb_000840_220--Hb_003582_010 Hb_161954_010 Hb_161954_010 Hb_006816_540--Hb_161954_010 Hb_004767_010 Hb_004767_010 Hb_006816_540--Hb_004767_010 Hb_002393_060 Hb_002393_060 Hb_006816_540--Hb_002393_060 Hb_006816_540--Hb_001227_010 Hb_001610_050 Hb_001610_050 Hb_000702_040--Hb_001610_050 Hb_004586_230 Hb_004586_230 Hb_000702_040--Hb_004586_230 Hb_001587_220 Hb_001587_220 Hb_000702_040--Hb_001587_220 Hb_005892_010 Hb_005892_010 Hb_000702_040--Hb_005892_010 Hb_021443_020 Hb_021443_020 Hb_001227_010--Hb_021443_020 Hb_001227_010--Hb_151616_010 Hb_132517_010 Hb_132517_010 Hb_001227_010--Hb_132517_010 Hb_001227_010--Hb_001610_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0181935 2.99087 0.166845 4.19487 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.393071 0.135174

CAGE analysis