Hb_021443_020

Information

Type -
Description -
Location Contig21443: 18125-19531
Sequence    

Annotation

kegg
ID pop:POPTR_0012s14310g
description POPTRDRAFT_422934; hypothetical protein
nr
ID XP_012090387.1
description PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JEQ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26212 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22144: 18727-19567
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021443_020 0.0 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
2 Hb_007313_050 0.0702628941 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
3 Hb_035006_010 0.0766045753 - - hypothetical protein POPTR_0017s11350g [Populus trichocarpa]
4 Hb_001059_050 0.0811559431 - - PREDICTED: putative F-box/LRR-repeat protein At3g18150 [Jatropha curcas]
5 Hb_000286_210 0.0866830205 - - hypothetical protein EUGRSUZ_C00018 [Eucalyptus grandis]
6 Hb_001610_050 0.0994970106 - - PREDICTED: subtilisin-like protease-like [Solanum tuberosum]
7 Hb_001227_010 0.1016221877 transcription factor TF Family: TCP hypothetical protein POPTR_0015s03140g [Populus trichocarpa]
8 Hb_151616_010 0.1041901867 - - -
9 Hb_001213_080 0.1060742481 - - PREDICTED: tubulin beta chain-like [Jatropha curcas]
10 Hb_005900_020 0.1086714418 - - -
11 Hb_002639_120 0.108754302 - - unnamed protein product [Vitis vinifera]
12 Hb_132517_010 0.1132507861 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like isoform X3 [Populus euphratica]
13 Hb_006890_050 0.1146173705 transcription factor TF Family: TCP PREDICTED: transcription factor CYCLOIDEA [Jatropha curcas]
14 Hb_003939_090 0.1180153746 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
15 Hb_005389_090 0.1271298624 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA27, putative [Ricinus communis]
16 Hb_000702_040 0.130274259 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
17 Hb_007075_020 0.1330275139 transcription factor TF Family: TRAF ankyrin repeat family protein [Populus trichocarpa]
18 Hb_004590_010 0.1428243556 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
19 Hb_003012_010 0.1430544257 - - conserved hypothetical protein [Ricinus communis]
20 Hb_160459_030 0.1439376847 - - PREDICTED: uncharacterized protein LOC105648122 [Jatropha curcas]

Gene co-expression network

sample Hb_021443_020 Hb_021443_020 Hb_007313_050 Hb_007313_050 Hb_021443_020--Hb_007313_050 Hb_035006_010 Hb_035006_010 Hb_021443_020--Hb_035006_010 Hb_001059_050 Hb_001059_050 Hb_021443_020--Hb_001059_050 Hb_000286_210 Hb_000286_210 Hb_021443_020--Hb_000286_210 Hb_001610_050 Hb_001610_050 Hb_021443_020--Hb_001610_050 Hb_001227_010 Hb_001227_010 Hb_021443_020--Hb_001227_010 Hb_001213_080 Hb_001213_080 Hb_007313_050--Hb_001213_080 Hb_003939_090 Hb_003939_090 Hb_007313_050--Hb_003939_090 Hb_007313_050--Hb_001059_050 Hb_007313_050--Hb_035006_010 Hb_007313_050--Hb_000286_210 Hb_035006_010--Hb_003939_090 Hb_035006_010--Hb_000286_210 Hb_005900_020 Hb_005900_020 Hb_035006_010--Hb_005900_020 Hb_035006_010--Hb_001059_050 Hb_001059_050--Hb_000286_210 Hb_151616_010 Hb_151616_010 Hb_001059_050--Hb_151616_010 Hb_132517_010 Hb_132517_010 Hb_001059_050--Hb_132517_010 Hb_001059_050--Hb_001213_080 Hb_000286_210--Hb_151616_010 Hb_003012_010 Hb_003012_010 Hb_000286_210--Hb_003012_010 Hb_000286_210--Hb_001213_080 Hb_002639_120 Hb_002639_120 Hb_000286_210--Hb_002639_120 Hb_000702_040 Hb_000702_040 Hb_001610_050--Hb_000702_040 Hb_005892_010 Hb_005892_010 Hb_001610_050--Hb_005892_010 Hb_001610_050--Hb_002639_120 Hb_006890_050 Hb_006890_050 Hb_001610_050--Hb_006890_050 Hb_001610_050--Hb_001227_010 Hb_001227_010--Hb_002639_120 Hb_001227_010--Hb_151616_010 Hb_001227_010--Hb_006890_050 Hb_001227_010--Hb_132517_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.036708 6.15561 0.754347 7.61401 0.0147833 0.0299076
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.36352 0.0551936

CAGE analysis