Hb_003939_090

Information

Type transcription factor
Description TF Family: NAC
Location Contig3939: 69156-70751
Sequence    

Annotation

kegg
ID rcu:RCOM_1446420
description transcription factor, putative
nr
ID XP_002512886.1
description transcription factor, putative [Ricinus communis]
swissprot
ID A2YMR0
description NAC transcription factor ONAC010 OS=Oryza sativa subsp. indica GN=ONAC010 PE=3 SV=1
trembl
ID B9RH27
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1446420 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 68

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39458: 69342-70676
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003939_090 0.0 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
2 Hb_015884_010 0.0899552494 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X1 [Jatropha curcas]
3 Hb_007313_050 0.0965215951 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
4 Hb_010642_010 0.0969716523 - - PREDICTED: aquaporin TIP2-1 [Jatropha curcas]
5 Hb_000702_040 0.11280494 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
6 Hb_035006_010 0.1130204117 - - hypothetical protein POPTR_0017s11350g [Populus trichocarpa]
7 Hb_021443_020 0.1180153746 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
8 Hb_006573_060 0.1183394294 - - hypothetical protein [Bruguiera gymnorhiza]
9 Hb_000128_090 0.1192404722 - - Reticuline oxidase precursor, putative [Ricinus communis]
10 Hb_001213_080 0.124051226 - - PREDICTED: tubulin beta chain-like [Jatropha curcas]
11 Hb_001587_220 0.1256601118 - - receptor protein kinase, putative [Ricinus communis]
12 Hb_000714_070 0.1283748867 transcription factor TF Family: LOB hypothetical protein JCGZ_14754 [Jatropha curcas]
13 Hb_145268_010 0.1297211841 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Jatropha curcas]
14 Hb_038718_010 0.1303865087 - - Disease resistance protein RFL1, putative [Ricinus communis]
15 Hb_001675_260 0.1309157494 - - nitrate transporter, putative [Ricinus communis]
16 Hb_008352_020 0.1316901573 - - hypothetical protein [Cecembia lonarensis]
17 Hb_000604_050 0.1339194463 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
18 Hb_012553_030 0.1339347696 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
19 Hb_001195_650 0.1346193111 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
20 Hb_103149_010 0.1346973462 - - hypothetical protein CISIN_1g0397312mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_003939_090 Hb_003939_090 Hb_015884_010 Hb_015884_010 Hb_003939_090--Hb_015884_010 Hb_007313_050 Hb_007313_050 Hb_003939_090--Hb_007313_050 Hb_010642_010 Hb_010642_010 Hb_003939_090--Hb_010642_010 Hb_000702_040 Hb_000702_040 Hb_003939_090--Hb_000702_040 Hb_035006_010 Hb_035006_010 Hb_003939_090--Hb_035006_010 Hb_021443_020 Hb_021443_020 Hb_003939_090--Hb_021443_020 Hb_012553_030 Hb_012553_030 Hb_015884_010--Hb_012553_030 Hb_015884_010--Hb_010642_010 Hb_000714_070 Hb_000714_070 Hb_015884_010--Hb_000714_070 Hb_103541_010 Hb_103541_010 Hb_015884_010--Hb_103541_010 Hb_000468_050 Hb_000468_050 Hb_015884_010--Hb_000468_050 Hb_007313_050--Hb_021443_020 Hb_001213_080 Hb_001213_080 Hb_007313_050--Hb_001213_080 Hb_001059_050 Hb_001059_050 Hb_007313_050--Hb_001059_050 Hb_007313_050--Hb_035006_010 Hb_000286_210 Hb_000286_210 Hb_007313_050--Hb_000286_210 Hb_030827_080 Hb_030827_080 Hb_010642_010--Hb_030827_080 Hb_002739_160 Hb_002739_160 Hb_010642_010--Hb_002739_160 Hb_008352_020 Hb_008352_020 Hb_010642_010--Hb_008352_020 Hb_038718_010 Hb_038718_010 Hb_010642_010--Hb_038718_010 Hb_001198_180 Hb_001198_180 Hb_010642_010--Hb_001198_180 Hb_001610_050 Hb_001610_050 Hb_000702_040--Hb_001610_050 Hb_004586_230 Hb_004586_230 Hb_000702_040--Hb_004586_230 Hb_001587_220 Hb_001587_220 Hb_000702_040--Hb_001587_220 Hb_002639_120 Hb_002639_120 Hb_000702_040--Hb_002639_120 Hb_006890_050 Hb_006890_050 Hb_000702_040--Hb_006890_050 Hb_005892_010 Hb_005892_010 Hb_000702_040--Hb_005892_010 Hb_035006_010--Hb_021443_020 Hb_035006_010--Hb_000286_210 Hb_005900_020 Hb_005900_020 Hb_035006_010--Hb_005900_020 Hb_035006_010--Hb_001059_050 Hb_021443_020--Hb_001059_050 Hb_021443_020--Hb_000286_210 Hb_021443_020--Hb_001610_050 Hb_001227_010 Hb_001227_010 Hb_021443_020--Hb_001227_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.085894 41.2332 10.3575 62.4706 0.111209 0.0253086
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.197544 0.0517775 0.0938177 9.46681 3.01969

CAGE analysis