Hb_000286_210

Information

Type -
Description -
Location Contig286: 178395-180495
Sequence    

Annotation

kegg
ID egr:104438699
description LRR receptor-like serine/threonine-protein kinase RCH1
nr
ID KCW78554.1
description hypothetical protein EUGRSUZ_C00018 [Eucalyptus grandis]
swissprot
ID Q9FKZ0
description Probable disease resistance protein At5g66910 OS=Arabidopsis thaliana GN=At5g66910 PE=2 SV=1
trembl
ID F6H8W6
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0034g00770 PE=4 SV=1
Gene Ontology
ID GO:0000166
description tmv resistance protein n-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000286_210 0.0 - - hypothetical protein EUGRSUZ_C00018 [Eucalyptus grandis]
2 Hb_151616_010 0.0455549641 - - -
3 Hb_001059_050 0.0532654454 - - PREDICTED: putative F-box/LRR-repeat protein At3g18150 [Jatropha curcas]
4 Hb_021443_020 0.0866830205 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
5 Hb_003012_010 0.0895929265 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001213_080 0.0959173553 - - PREDICTED: tubulin beta chain-like [Jatropha curcas]
7 Hb_002639_120 0.097158437 - - unnamed protein product [Vitis vinifera]
8 Hb_002422_010 0.0978604517 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
9 Hb_007313_050 0.1135741225 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
10 Hb_132517_010 0.1163101011 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like isoform X3 [Populus euphratica]
11 Hb_035006_010 0.1165236316 - - hypothetical protein POPTR_0017s11350g [Populus trichocarpa]
12 Hb_001227_010 0.1178033523 transcription factor TF Family: TCP hypothetical protein POPTR_0015s03140g [Populus trichocarpa]
13 Hb_005900_020 0.119844985 - - -
14 Hb_006890_050 0.1251783618 transcription factor TF Family: TCP PREDICTED: transcription factor CYCLOIDEA [Jatropha curcas]
15 Hb_005389_090 0.1365323559 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA27, putative [Ricinus communis]
16 Hb_148914_020 0.1419596859 - - PREDICTED: uncharacterized protein LOC105637821 [Jatropha curcas]
17 Hb_003939_090 0.1420986597 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
18 Hb_005396_110 0.1424632074 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001318_180 0.1472527988 - - PREDICTED: protein NIM1-INTERACTING 1 [Jatropha curcas]
20 Hb_004007_190 0.1498799734 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein AZF2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000286_210 Hb_000286_210 Hb_151616_010 Hb_151616_010 Hb_000286_210--Hb_151616_010 Hb_001059_050 Hb_001059_050 Hb_000286_210--Hb_001059_050 Hb_021443_020 Hb_021443_020 Hb_000286_210--Hb_021443_020 Hb_003012_010 Hb_003012_010 Hb_000286_210--Hb_003012_010 Hb_001213_080 Hb_001213_080 Hb_000286_210--Hb_001213_080 Hb_002639_120 Hb_002639_120 Hb_000286_210--Hb_002639_120 Hb_151616_010--Hb_001059_050 Hb_151616_010--Hb_002639_120 Hb_002422_010 Hb_002422_010 Hb_151616_010--Hb_002422_010 Hb_132517_010 Hb_132517_010 Hb_151616_010--Hb_132517_010 Hb_151616_010--Hb_003012_010 Hb_001059_050--Hb_021443_020 Hb_001059_050--Hb_132517_010 Hb_001059_050--Hb_001213_080 Hb_007313_050 Hb_007313_050 Hb_001059_050--Hb_007313_050 Hb_021443_020--Hb_007313_050 Hb_035006_010 Hb_035006_010 Hb_021443_020--Hb_035006_010 Hb_001610_050 Hb_001610_050 Hb_021443_020--Hb_001610_050 Hb_001227_010 Hb_001227_010 Hb_021443_020--Hb_001227_010 Hb_003012_010--Hb_002422_010 Hb_001808_010 Hb_001808_010 Hb_003012_010--Hb_001808_010 Hb_003012_010--Hb_002639_120 Hb_001318_180 Hb_001318_180 Hb_003012_010--Hb_001318_180 Hb_001213_080--Hb_007313_050 Hb_148914_020 Hb_148914_020 Hb_001213_080--Hb_148914_020 Hb_048937_010 Hb_048937_010 Hb_001213_080--Hb_048937_010 Hb_000128_090 Hb_000128_090 Hb_001213_080--Hb_000128_090 Hb_006890_050 Hb_006890_050 Hb_002639_120--Hb_006890_050 Hb_002025_120 Hb_002025_120 Hb_002639_120--Hb_002025_120 Hb_002639_120--Hb_001227_010 Hb_000702_040 Hb_000702_040 Hb_002639_120--Hb_000702_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.148944 0.0202347 0.186194 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0196417 0

CAGE analysis