Hb_002025_120

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig2025: 76162-78742
Sequence    

Annotation

kegg
ID rcu:RCOM_0775080
description transcription factor, putative
nr
ID XP_012072429.1
description PREDICTED: uncharacterized protein LOC105634212 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KQ45
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04860 PE=4 SV=1
Gene Ontology
ID GO:0003677
description trihelix transcription factor gtl1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002025_120 0.0 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105634212 [Jatropha curcas]
2 Hb_004659_110 0.0561007056 - - PREDICTED: BURP domain-containing protein 3-like [Jatropha curcas]
3 Hb_004007_190 0.0785959678 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein AZF2-like [Jatropha curcas]
4 Hb_002639_120 0.0904931137 - - unnamed protein product [Vitis vinifera]
5 Hb_012395_260 0.1177932509 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
6 Hb_002422_010 0.120436411 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
7 Hb_000702_040 0.121974021 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
8 Hb_001318_180 0.1258960515 - - PREDICTED: protein NIM1-INTERACTING 1 [Jatropha curcas]
9 Hb_003031_070 0.1335638629 - - PREDICTED: cysteine-rich repeat secretory protein 55-like [Jatropha curcas]
10 Hb_151616_010 0.1342662691 - - -
11 Hb_172240_010 0.1357797573 - - PREDICTED: uncharacterized protein LOC105795660 [Gossypium raimondii]
12 Hb_000604_050 0.1359833073 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
13 Hb_007007_110 0.1392310067 - - hypothetical protein JCGZ_14479 [Jatropha curcas]
14 Hb_000021_010 0.139773555 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006890_050 0.1398766476 transcription factor TF Family: TCP PREDICTED: transcription factor CYCLOIDEA [Jatropha curcas]
16 Hb_009787_020 0.1409879219 - - PREDICTED: cytochrome P450 705A5-like [Jatropha curcas]
17 Hb_003529_010 0.1422702683 - - PREDICTED: disease resistance protein RPS6-like [Jatropha curcas]
18 Hb_039410_010 0.1427701808 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
19 Hb_005389_090 0.1441244765 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA27, putative [Ricinus communis]
20 Hb_047725_010 0.1441511046 - - ceramidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002025_120 Hb_002025_120 Hb_004659_110 Hb_004659_110 Hb_002025_120--Hb_004659_110 Hb_004007_190 Hb_004007_190 Hb_002025_120--Hb_004007_190 Hb_002639_120 Hb_002639_120 Hb_002025_120--Hb_002639_120 Hb_012395_260 Hb_012395_260 Hb_002025_120--Hb_012395_260 Hb_002422_010 Hb_002422_010 Hb_002025_120--Hb_002422_010 Hb_000702_040 Hb_000702_040 Hb_002025_120--Hb_000702_040 Hb_004659_110--Hb_012395_260 Hb_004659_110--Hb_004007_190 Hb_009787_020 Hb_009787_020 Hb_004659_110--Hb_009787_020 Hb_010267_030 Hb_010267_030 Hb_004659_110--Hb_010267_030 Hb_000201_070 Hb_000201_070 Hb_004659_110--Hb_000201_070 Hb_001318_180 Hb_001318_180 Hb_004007_190--Hb_001318_180 Hb_003529_010 Hb_003529_010 Hb_004007_190--Hb_003529_010 Hb_001675_260 Hb_001675_260 Hb_004007_190--Hb_001675_260 Hb_000021_010 Hb_000021_010 Hb_004007_190--Hb_000021_010 Hb_000604_050 Hb_000604_050 Hb_004007_190--Hb_000604_050 Hb_006890_050 Hb_006890_050 Hb_002639_120--Hb_006890_050 Hb_151616_010 Hb_151616_010 Hb_002639_120--Hb_151616_010 Hb_001227_010 Hb_001227_010 Hb_002639_120--Hb_001227_010 Hb_000286_210 Hb_000286_210 Hb_002639_120--Hb_000286_210 Hb_002639_120--Hb_000702_040 Hb_004586_230 Hb_004586_230 Hb_012395_260--Hb_004586_230 Hb_012395_260--Hb_000201_070 Hb_012395_260--Hb_000604_050 Hb_012395_260--Hb_000702_040 Hb_003012_010 Hb_003012_010 Hb_002422_010--Hb_003012_010 Hb_002422_010--Hb_151616_010 Hb_000167_090 Hb_000167_090 Hb_002422_010--Hb_000167_090 Hb_002422_010--Hb_000286_210 Hb_001808_010 Hb_001808_010 Hb_002422_010--Hb_001808_010 Hb_039410_010 Hb_039410_010 Hb_002422_010--Hb_039410_010 Hb_001610_050 Hb_001610_050 Hb_000702_040--Hb_001610_050 Hb_000702_040--Hb_004586_230 Hb_001587_220 Hb_001587_220 Hb_000702_040--Hb_001587_220 Hb_000702_040--Hb_006890_050 Hb_005892_010 Hb_005892_010 Hb_000702_040--Hb_005892_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.73742 0.2029 1.70976 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0527714 0.0888287

CAGE analysis