Hb_000167_090

Information

Type -
Description -
Location Contig167: 58602-60315
Sequence    

Annotation

kegg
ID rcu:RCOM_0722110
description hypothetical protein
nr
ID XP_002529599.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SUD0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0722110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000167_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002548_010 0.0450517747 - - hypothetical protein EUGRSUZ_L00530 [Eucalyptus grandis]
3 Hb_039410_010 0.0631350124 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
4 Hb_000203_090 0.0730692642 - - hypothetical protein POPTR_0013s04080g [Populus trichocarpa]
5 Hb_002422_010 0.0957279341 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
6 Hb_001104_250 0.0974910987 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Ricinus communis]
7 Hb_000769_050 0.0976408542 - - hypothetical protein CISIN_1g030637mg [Citrus sinensis]
8 Hb_001957_050 0.100175663 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
9 Hb_001414_120 0.113397013 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
10 Hb_182625_010 0.1190068658 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
11 Hb_002869_040 0.1244069321 - - PREDICTED: metal tolerance protein 4 [Jatropha curcas]
12 Hb_005040_010 0.12456995 - - hypothetical protein RCOM_1110360 [Ricinus communis]
13 Hb_003012_010 0.124663688 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006590_030 0.125210704 - - unknown [Populus trichocarpa]
15 Hb_004007_190 0.1321213501 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein AZF2-like [Jatropha curcas]
16 Hb_000152_090 0.1348431368 - - unnamed protein product [Coffea canephora]
17 Hb_000021_010 0.1370318403 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004458_010 0.1432132251 - - PREDICTED: RING-H2 finger protein ATL78-like [Jatropha curcas]
19 Hb_003529_010 0.1472459937 - - PREDICTED: disease resistance protein RPS6-like [Jatropha curcas]
20 Hb_123887_010 0.1511290472 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]

Gene co-expression network

sample Hb_000167_090 Hb_000167_090 Hb_002548_010 Hb_002548_010 Hb_000167_090--Hb_002548_010 Hb_039410_010 Hb_039410_010 Hb_000167_090--Hb_039410_010 Hb_000203_090 Hb_000203_090 Hb_000167_090--Hb_000203_090 Hb_002422_010 Hb_002422_010 Hb_000167_090--Hb_002422_010 Hb_001104_250 Hb_001104_250 Hb_000167_090--Hb_001104_250 Hb_000769_050 Hb_000769_050 Hb_000167_090--Hb_000769_050 Hb_002548_010--Hb_001104_250 Hb_002548_010--Hb_000769_050 Hb_002548_010--Hb_000203_090 Hb_000152_090 Hb_000152_090 Hb_002548_010--Hb_000152_090 Hb_182625_010 Hb_182625_010 Hb_002548_010--Hb_182625_010 Hb_039410_010--Hb_000203_090 Hb_165552_020 Hb_165552_020 Hb_039410_010--Hb_165552_020 Hb_005040_010 Hb_005040_010 Hb_039410_010--Hb_005040_010 Hb_001957_050 Hb_001957_050 Hb_039410_010--Hb_001957_050 Hb_003602_080 Hb_003602_080 Hb_039410_010--Hb_003602_080 Hb_000203_090--Hb_182625_010 Hb_000769_030 Hb_000769_030 Hb_000203_090--Hb_000769_030 Hb_014361_140 Hb_014361_140 Hb_000203_090--Hb_014361_140 Hb_003012_010 Hb_003012_010 Hb_002422_010--Hb_003012_010 Hb_151616_010 Hb_151616_010 Hb_002422_010--Hb_151616_010 Hb_000286_210 Hb_000286_210 Hb_002422_010--Hb_000286_210 Hb_001808_010 Hb_001808_010 Hb_002422_010--Hb_001808_010 Hb_002422_010--Hb_039410_010 Hb_001104_250--Hb_000769_050 Hb_003839_060 Hb_003839_060 Hb_001104_250--Hb_003839_060 Hb_003442_020 Hb_003442_020 Hb_001104_250--Hb_003442_020 Hb_123887_010 Hb_123887_010 Hb_001104_250--Hb_123887_010 Hb_001104_250--Hb_000152_090 Hb_000769_050--Hb_123887_010 Hb_000769_050--Hb_000152_090 Hb_000769_050--Hb_003442_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.320673 0.0546889 0.44101 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis