Hb_182625_010

Information

Type -
Description -
Location Contig182625: 2690-2965
Sequence    

Annotation

kegg
ID pda:103696607
description uncharacterized LOC103696607
nr
ID XP_008776509.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
swissprot
ID -
description -
trembl
ID G7KKP0
description Uncharacterized protein OS=Medicago truncatula GN=MTR_6g078050 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_182625_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
2 Hb_011671_360 0.0380047902 - - Hyoscyamine 6-dioxygenase, putative [Ricinus communis]
3 Hb_104855_010 0.0644014427 - - -
4 Hb_000203_090 0.08109166 - - hypothetical protein POPTR_0013s04080g [Populus trichocarpa]
5 Hb_014361_140 0.089858117 - - PREDICTED: peroxidase 51 [Jatropha curcas]
6 Hb_003073_060 0.0904265583 - - -
7 Hb_000152_090 0.0918494987 - - unnamed protein product [Coffea canephora]
8 Hb_000072_010 0.1002434383 - - hypothetical protein B456_006G246700 [Gossypium raimondii]
9 Hb_002548_010 0.1037320263 - - hypothetical protein EUGRSUZ_L00530 [Eucalyptus grandis]
10 Hb_000061_060 0.1049768842 transcription factor TF Family: MYB-related transcription factor MYB28 [Arabidopsis thaliana]
11 Hb_005428_010 0.1117648198 - - cytochrome P450, putative [Ricinus communis]
12 Hb_128460_020 0.1136311072 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 isoform X1 [Nicotiana tomentosiformis]
13 Hb_005773_010 0.1185200351 - - -
14 Hb_000167_090 0.1190068658 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001948_100 0.1197733657 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000925_020 0.1274819884 - - PREDICTED: protein YLS9 [Jatropha curcas]
17 Hb_158110_010 0.1279432038 - - hypothetical protein CICLE_v10012017mg [Citrus clementina]
18 Hb_000769_050 0.1320825441 - - hypothetical protein CISIN_1g030637mg [Citrus sinensis]
19 Hb_000769_030 0.1330416971 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_039410_010 0.1345311033 - - hypothetical protein JCGZ_23771 [Jatropha curcas]

Gene co-expression network

sample Hb_182625_010 Hb_182625_010 Hb_011671_360 Hb_011671_360 Hb_182625_010--Hb_011671_360 Hb_104855_010 Hb_104855_010 Hb_182625_010--Hb_104855_010 Hb_000203_090 Hb_000203_090 Hb_182625_010--Hb_000203_090 Hb_014361_140 Hb_014361_140 Hb_182625_010--Hb_014361_140 Hb_003073_060 Hb_003073_060 Hb_182625_010--Hb_003073_060 Hb_000152_090 Hb_000152_090 Hb_182625_010--Hb_000152_090 Hb_011671_360--Hb_104855_010 Hb_000072_010 Hb_000072_010 Hb_011671_360--Hb_000072_010 Hb_011671_360--Hb_003073_060 Hb_005428_010 Hb_005428_010 Hb_011671_360--Hb_005428_010 Hb_005773_010 Hb_005773_010 Hb_011671_360--Hb_005773_010 Hb_104855_010--Hb_000072_010 Hb_104855_010--Hb_005773_010 Hb_000061_060 Hb_000061_060 Hb_104855_010--Hb_000061_060 Hb_104855_010--Hb_014361_140 Hb_039410_010 Hb_039410_010 Hb_000203_090--Hb_039410_010 Hb_000167_090 Hb_000167_090 Hb_000203_090--Hb_000167_090 Hb_000769_030 Hb_000769_030 Hb_000203_090--Hb_000769_030 Hb_002548_010 Hb_002548_010 Hb_000203_090--Hb_002548_010 Hb_000203_090--Hb_014361_140 Hb_128460_020 Hb_128460_020 Hb_014361_140--Hb_128460_020 Hb_014361_140--Hb_000061_060 Hb_053935_010 Hb_053935_010 Hb_014361_140--Hb_053935_010 Hb_158110_010 Hb_158110_010 Hb_014361_140--Hb_158110_010 Hb_004241_190 Hb_004241_190 Hb_014361_140--Hb_004241_190 Hb_003073_060--Hb_005428_010 Hb_000352_020 Hb_000352_020 Hb_003073_060--Hb_000352_020 Hb_009838_030 Hb_009838_030 Hb_003073_060--Hb_009838_030 Hb_001948_100 Hb_001948_100 Hb_003073_060--Hb_001948_100 Hb_003073_060--Hb_000152_090 Hb_000152_090--Hb_001948_100 Hb_000152_090--Hb_009838_030 Hb_003337_010 Hb_003337_010 Hb_000152_090--Hb_003337_010 Hb_002014_120 Hb_002014_120 Hb_000152_090--Hb_002014_120 Hb_001104_250 Hb_001104_250 Hb_000152_090--Hb_001104_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.52211 2.55984 9.06143 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis