Hb_011671_360

Information

Type -
Description -
Location Contig11671: 293647-294174
Sequence    

Annotation

kegg
ID rcu:RCOM_1502410
description Hyoscyamine 6-dioxygenase, putative (EC:1.14.11.23)
nr
ID XP_002511022.1
description Hyoscyamine 6-dioxygenase, putative [Ricinus communis]
swissprot
ID Q39224
description Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1
trembl
ID B9R9Z7
description Hyoscyamine 6-dioxygenase, putative OS=Ricinus communis GN=RCOM_1502410 PE=3 SV=1
Gene Ontology
ID GO:0045431
description protein srg1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011671_360 0.0 - - Hyoscyamine 6-dioxygenase, putative [Ricinus communis]
2 Hb_182625_010 0.0380047902 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
3 Hb_104855_010 0.0419738052 - - -
4 Hb_000072_010 0.0642014973 - - hypothetical protein B456_006G246700 [Gossypium raimondii]
5 Hb_003073_060 0.0675846801 - - -
6 Hb_005428_010 0.0822381435 - - cytochrome P450, putative [Ricinus communis]
7 Hb_005773_010 0.0868701765 - - -
8 Hb_014361_140 0.0950528559 - - PREDICTED: peroxidase 51 [Jatropha curcas]
9 Hb_000152_090 0.0974044002 - - unnamed protein product [Coffea canephora]
10 Hb_000061_060 0.0993501013 transcription factor TF Family: MYB-related transcription factor MYB28 [Arabidopsis thaliana]
11 Hb_001948_100 0.1147963037 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000203_090 0.1169790897 - - hypothetical protein POPTR_0013s04080g [Populus trichocarpa]
13 Hb_128460_020 0.1180639932 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 isoform X1 [Nicotiana tomentosiformis]
14 Hb_000352_020 0.120033794 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor LEP [Jatropha curcas]
15 Hb_009838_030 0.1210599055 - - Tetratricopeptide repeat-like superfamily protein [Theobroma cacao]
16 Hb_039440_010 0.1255950296 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000925_020 0.1283746319 - - PREDICTED: protein YLS9 [Jatropha curcas]
18 Hb_158110_010 0.129576308 - - hypothetical protein CICLE_v10012017mg [Citrus clementina]
19 Hb_000628_050 0.1353494154 - - nucleic acid binding protein, putative [Ricinus communis]
20 Hb_002548_010 0.1355991225 - - hypothetical protein EUGRSUZ_L00530 [Eucalyptus grandis]

Gene co-expression network

sample Hb_011671_360 Hb_011671_360 Hb_182625_010 Hb_182625_010 Hb_011671_360--Hb_182625_010 Hb_104855_010 Hb_104855_010 Hb_011671_360--Hb_104855_010 Hb_000072_010 Hb_000072_010 Hb_011671_360--Hb_000072_010 Hb_003073_060 Hb_003073_060 Hb_011671_360--Hb_003073_060 Hb_005428_010 Hb_005428_010 Hb_011671_360--Hb_005428_010 Hb_005773_010 Hb_005773_010 Hb_011671_360--Hb_005773_010 Hb_182625_010--Hb_104855_010 Hb_000203_090 Hb_000203_090 Hb_182625_010--Hb_000203_090 Hb_014361_140 Hb_014361_140 Hb_182625_010--Hb_014361_140 Hb_182625_010--Hb_003073_060 Hb_000152_090 Hb_000152_090 Hb_182625_010--Hb_000152_090 Hb_104855_010--Hb_000072_010 Hb_104855_010--Hb_005773_010 Hb_000061_060 Hb_000061_060 Hb_104855_010--Hb_000061_060 Hb_104855_010--Hb_014361_140 Hb_000072_010--Hb_005773_010 Hb_039440_010 Hb_039440_010 Hb_000072_010--Hb_039440_010 Hb_000072_010--Hb_005428_010 Hb_160950_010 Hb_160950_010 Hb_000072_010--Hb_160950_010 Hb_003073_060--Hb_005428_010 Hb_000352_020 Hb_000352_020 Hb_003073_060--Hb_000352_020 Hb_009838_030 Hb_009838_030 Hb_003073_060--Hb_009838_030 Hb_001948_100 Hb_001948_100 Hb_003073_060--Hb_001948_100 Hb_003073_060--Hb_000152_090 Hb_005428_010--Hb_000352_020 Hb_005428_010--Hb_009838_030 Hb_005428_010--Hb_001948_100 Hb_000628_050 Hb_000628_050 Hb_005773_010--Hb_000628_050 Hb_005773_010--Hb_160950_010 Hb_005773_010--Hb_039440_010 Hb_005773_010--Hb_000061_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.198623 0.121074 0.363283 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis