Hb_003442_020

Information

Type -
Description -
Location Contig3442: 7904-8143
Sequence    

Annotation

kegg
ID rcu:RCOM_1096900
description ccd1, putative
nr
ID XP_002524717.1
description ccd1, putative [Ricinus communis]
swissprot
ID Q9LSQ6
description Calcium-binding protein PBP1 OS=Arabidopsis thaliana GN=PBP1 PE=1 SV=1
trembl
ID B9SFE8
description Ccd1, putative OS=Ricinus communis GN=RCOM_1096900 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003442_020 0.0 - - ccd1, putative [Ricinus communis]
2 Hb_010261_050 0.0470895693 - - DNA binding protein, putative [Ricinus communis]
3 Hb_003839_060 0.0502582371 - - PREDICTED: BURP domain-containing protein 11-like [Gossypium raimondii]
4 Hb_003337_010 0.0653181878 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001104_250 0.0697428294 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Ricinus communis]
6 Hb_123887_010 0.0709398587 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
7 Hb_003777_100 0.0734510664 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
8 Hb_103000_010 0.0768450142 - - hypothetical protein POPTR_0007s02210g [Populus trichocarpa]
9 Hb_001948_100 0.0851623766 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004652_040 0.0865221685 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
11 Hb_000152_090 0.087746672 - - unnamed protein product [Coffea canephora]
12 Hb_002014_120 0.0936832429 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP8 [Populus euphratica]
13 Hb_174644_010 0.097433927 - - -
14 Hb_166700_010 0.0974680104 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
15 Hb_000174_130 0.097800111 - - flowering locus T-like protein [Fagus crenata]
16 Hb_000164_250 0.0984491945 - - hypothetical protein CISIN_1g040645mg [Citrus sinensis]
17 Hb_000769_050 0.102160894 - - hypothetical protein CISIN_1g030637mg [Citrus sinensis]
18 Hb_005695_050 0.1055415485 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
19 Hb_179367_010 0.1085701872 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
20 Hb_009838_030 0.1103660426 - - Tetratricopeptide repeat-like superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_003442_020 Hb_003442_020 Hb_010261_050 Hb_010261_050 Hb_003442_020--Hb_010261_050 Hb_003839_060 Hb_003839_060 Hb_003442_020--Hb_003839_060 Hb_003337_010 Hb_003337_010 Hb_003442_020--Hb_003337_010 Hb_001104_250 Hb_001104_250 Hb_003442_020--Hb_001104_250 Hb_123887_010 Hb_123887_010 Hb_003442_020--Hb_123887_010 Hb_003777_100 Hb_003777_100 Hb_003442_020--Hb_003777_100 Hb_010261_050--Hb_003777_100 Hb_166700_010 Hb_166700_010 Hb_010261_050--Hb_166700_010 Hb_103000_010 Hb_103000_010 Hb_010261_050--Hb_103000_010 Hb_010261_050--Hb_003337_010 Hb_000174_130 Hb_000174_130 Hb_010261_050--Hb_000174_130 Hb_174644_010 Hb_174644_010 Hb_003839_060--Hb_174644_010 Hb_003839_060--Hb_001104_250 Hb_003839_060--Hb_123887_010 Hb_023536_020 Hb_023536_020 Hb_003839_060--Hb_023536_020 Hb_003839_060--Hb_003777_100 Hb_003337_010--Hb_103000_010 Hb_004652_040 Hb_004652_040 Hb_003337_010--Hb_004652_040 Hb_002014_120 Hb_002014_120 Hb_003337_010--Hb_002014_120 Hb_001948_100 Hb_001948_100 Hb_003337_010--Hb_001948_100 Hb_179367_010 Hb_179367_010 Hb_003337_010--Hb_179367_010 Hb_009838_030 Hb_009838_030 Hb_003337_010--Hb_009838_030 Hb_002548_010 Hb_002548_010 Hb_001104_250--Hb_002548_010 Hb_000769_050 Hb_000769_050 Hb_001104_250--Hb_000769_050 Hb_001104_250--Hb_123887_010 Hb_000152_090 Hb_000152_090 Hb_001104_250--Hb_000152_090 Hb_123887_010--Hb_000769_050 Hb_123887_010--Hb_010261_050 Hb_123887_010--Hb_174644_010 Hb_000164_250 Hb_000164_250 Hb_003777_100--Hb_000164_250 Hb_032280_010 Hb_032280_010 Hb_003777_100--Hb_032280_010 Hb_000172_260 Hb_000172_260 Hb_003777_100--Hb_000172_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.47838 1.91121 21.4218 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis