Hb_000164_250

Information

Type -
Description -
Location Contig164: 242442-244567
Sequence    

Annotation

kegg
ID sbi:SORBI_09g000980
description SORBIDRAFT_09g000980, Sb09g000980; hypothetical protein
nr
ID KDO41092.1
description hypothetical protein CISIN_1g040645mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067DPZ4
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g040645mg PE=4 SV=1
Gene Ontology
ID GO:0000287
description (-)-germacrene d synthase-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000164_250 0.0 - - hypothetical protein CISIN_1g040645mg [Citrus sinensis]
2 Hb_003777_100 0.0304598429 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
3 Hb_032280_010 0.0408406207 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
4 Hb_000172_260 0.0496023142 - - PREDICTED: low affinity sulfate transporter 3 [Jatropha curcas]
5 Hb_041067_010 0.0737988006 - - hypothetical protein JCGZ_00780 [Jatropha curcas]
6 Hb_103931_010 0.0772260438 - - -
7 Hb_010261_050 0.0848458815 - - DNA binding protein, putative [Ricinus communis]
8 Hb_003839_060 0.0885780499 - - PREDICTED: BURP domain-containing protein 11-like [Gossypium raimondii]
9 Hb_004148_030 0.0923813245 - - PREDICTED: protein RAFTIN 1B-like [Gossypium raimondii]
10 Hb_015085_010 0.0941447064 - - hypothetical protein POPTR_0018s11360g [Populus trichocarpa]
11 Hb_000628_100 0.0958261536 - - hypothetical protein MTR_1g019660 [Medicago truncatula]
12 Hb_174644_010 0.0973322473 - - -
13 Hb_003442_020 0.0984491945 - - ccd1, putative [Ricinus communis]
14 Hb_001053_100 0.1035727206 - - DNA-damage-inducible protein f, putative [Ricinus communis]
15 Hb_005695_050 0.1111094233 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
16 Hb_002025_190 0.112391019 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]
17 Hb_000999_060 0.1145762917 - - hypothetical protein POPTR_0018s11350g [Populus trichocarpa]
18 Hb_002217_480 0.1177744716 - - PREDICTED: uncharacterized protein LOC105115446 [Populus euphratica]
19 Hb_001147_120 0.1206321261 - - hypothetical protein JCGZ_14802 [Jatropha curcas]
20 Hb_001825_030 0.1207111647 transcription factor TF Family: C2H2 PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]

Gene co-expression network

sample Hb_000164_250 Hb_000164_250 Hb_003777_100 Hb_003777_100 Hb_000164_250--Hb_003777_100 Hb_032280_010 Hb_032280_010 Hb_000164_250--Hb_032280_010 Hb_000172_260 Hb_000172_260 Hb_000164_250--Hb_000172_260 Hb_041067_010 Hb_041067_010 Hb_000164_250--Hb_041067_010 Hb_103931_010 Hb_103931_010 Hb_000164_250--Hb_103931_010 Hb_010261_050 Hb_010261_050 Hb_000164_250--Hb_010261_050 Hb_003777_100--Hb_010261_050 Hb_003777_100--Hb_032280_010 Hb_003777_100--Hb_000172_260 Hb_003442_020 Hb_003442_020 Hb_003777_100--Hb_003442_020 Hb_003839_060 Hb_003839_060 Hb_003777_100--Hb_003839_060 Hb_032280_010--Hb_000172_260 Hb_032280_010--Hb_041067_010 Hb_004148_030 Hb_004148_030 Hb_032280_010--Hb_004148_030 Hb_032280_010--Hb_103931_010 Hb_000172_260--Hb_004148_030 Hb_000172_260--Hb_041067_010 Hb_000172_260--Hb_103931_010 Hb_041067_010--Hb_004148_030 Hb_002217_480 Hb_002217_480 Hb_041067_010--Hb_002217_480 Hb_015085_010 Hb_015085_010 Hb_041067_010--Hb_015085_010 Hb_103931_010--Hb_015085_010 Hb_001053_100 Hb_001053_100 Hb_103931_010--Hb_001053_100 Hb_103931_010--Hb_041067_010 Hb_010261_050--Hb_003442_020 Hb_166700_010 Hb_166700_010 Hb_010261_050--Hb_166700_010 Hb_103000_010 Hb_103000_010 Hb_010261_050--Hb_103000_010 Hb_003337_010 Hb_003337_010 Hb_010261_050--Hb_003337_010 Hb_000174_130 Hb_000174_130 Hb_010261_050--Hb_000174_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.75968 0.311202 8.73464 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis