Hb_041067_010

Information

Type -
Description -
Location Contig41067: 1921-3897
Sequence    

Annotation

kegg
ID cmo:103493386
description TPS, CmTpsNY; (+)-gamma-cadinene synthase (EC:4.2.3.13 4.2.3.92)
nr
ID KDP39023.1
description hypothetical protein JCGZ_00780 [Jatropha curcas]
swissprot
ID B2KSJ5
description (+)-gamma-cadinene synthase OS=Cucumis melo PE=1 SV=1
trembl
ID A0A067KVJ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00780 PE=4 SV=1
Gene Ontology
ID GO:0047461
description alpha-copaene synthase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40554: 1906-3561
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_041067_010 0.0 - - hypothetical protein JCGZ_00780 [Jatropha curcas]
2 Hb_004148_030 0.0501229427 - - PREDICTED: protein RAFTIN 1B-like [Gossypium raimondii]
3 Hb_032280_010 0.0515697441 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
4 Hb_002217_480 0.0523888518 - - PREDICTED: uncharacterized protein LOC105115446 [Populus euphratica]
5 Hb_015085_010 0.0687176304 - - hypothetical protein POPTR_0018s11360g [Populus trichocarpa]
6 Hb_000164_250 0.0737988006 - - hypothetical protein CISIN_1g040645mg [Citrus sinensis]
7 Hb_000172_260 0.0751947077 - - PREDICTED: low affinity sulfate transporter 3 [Jatropha curcas]
8 Hb_001053_100 0.0756116785 - - DNA-damage-inducible protein f, putative [Ricinus communis]
9 Hb_000318_070 0.077197377 - - PREDICTED: peroxidase 10-like [Jatropha curcas]
10 Hb_170674_020 0.0773239339 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
11 Hb_013399_040 0.0783282413 - - hypothetical protein JCGZ_24713 [Jatropha curcas]
12 Hb_001998_160 0.0791546618 - - PREDICTED: origin recognition complex subunit 1-like [Populus euphratica]
13 Hb_000327_050 0.0796967625 - - PREDICTED: protein NRT1/ PTR FAMILY 2.7-like isoform X1 [Populus euphratica]
14 Hb_002304_120 0.0818271788 - - conserved hypothetical protein [Ricinus communis]
15 Hb_103931_010 0.0828499762 - - -
16 Hb_000321_020 0.0840497055 - - PREDICTED: uncharacterized protein LOC104891638 [Beta vulgaris subsp. vulgaris]
17 Hb_009501_010 0.0859722009 - - Disease resistance protein RPS5, putative [Ricinus communis]
18 Hb_005463_120 0.086278054 - - gibberellin 20-oxidase, putative [Ricinus communis]
19 Hb_137821_010 0.0884751181 - - hypothetical protein CISIN_1g034189mg [Citrus sinensis]
20 Hb_001147_120 0.0938902983 - - hypothetical protein JCGZ_14802 [Jatropha curcas]

Gene co-expression network

sample Hb_041067_010 Hb_041067_010 Hb_004148_030 Hb_004148_030 Hb_041067_010--Hb_004148_030 Hb_032280_010 Hb_032280_010 Hb_041067_010--Hb_032280_010 Hb_002217_480 Hb_002217_480 Hb_041067_010--Hb_002217_480 Hb_015085_010 Hb_015085_010 Hb_041067_010--Hb_015085_010 Hb_000164_250 Hb_000164_250 Hb_041067_010--Hb_000164_250 Hb_000172_260 Hb_000172_260 Hb_041067_010--Hb_000172_260 Hb_004148_030--Hb_002217_480 Hb_002304_120 Hb_002304_120 Hb_004148_030--Hb_002304_120 Hb_000321_020 Hb_000321_020 Hb_004148_030--Hb_000321_020 Hb_000327_050 Hb_000327_050 Hb_004148_030--Hb_000327_050 Hb_013399_040 Hb_013399_040 Hb_004148_030--Hb_013399_040 Hb_001147_120 Hb_001147_120 Hb_004148_030--Hb_001147_120 Hb_032280_010--Hb_000172_260 Hb_032280_010--Hb_000164_250 Hb_032280_010--Hb_004148_030 Hb_003777_100 Hb_003777_100 Hb_032280_010--Hb_003777_100 Hb_103931_010 Hb_103931_010 Hb_032280_010--Hb_103931_010 Hb_001998_160 Hb_001998_160 Hb_002217_480--Hb_001998_160 Hb_000318_070 Hb_000318_070 Hb_002217_480--Hb_000318_070 Hb_170674_020 Hb_170674_020 Hb_002217_480--Hb_170674_020 Hb_002217_480--Hb_013399_040 Hb_009501_010 Hb_009501_010 Hb_002217_480--Hb_009501_010 Hb_015085_010--Hb_103931_010 Hb_001053_100 Hb_001053_100 Hb_015085_010--Hb_001053_100 Hb_015085_010--Hb_032280_010 Hb_015085_010--Hb_000164_250 Hb_003747_080 Hb_003747_080 Hb_015085_010--Hb_003747_080 Hb_000164_250--Hb_003777_100 Hb_000164_250--Hb_000172_260 Hb_000164_250--Hb_103931_010 Hb_010261_050 Hb_010261_050 Hb_000164_250--Hb_010261_050 Hb_000172_260--Hb_003777_100 Hb_000172_260--Hb_004148_030 Hb_000172_260--Hb_103931_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.353571 0.0343525 2.50736 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis