Hb_002422_010

Information

Type -
Description -
Location Contig2422: 879-1733
Sequence    

Annotation

kegg
ID tcc:TCM_030368
description E3 ubiquitin-protein ligase UPL5
nr
ID XP_007026270.1
description E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
swissprot
ID Q9SU29
description E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5 PE=1 SV=1
trembl
ID A0A061GI97
description E3 ubiquitin-protein ligase UPL5 OS=Theobroma cacao GN=TCM_030368 PE=4 SV=1
Gene Ontology
ID GO:0003824
description e3 ubiquitin-protein ligase upl5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002422_010 0.0 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
2 Hb_003012_010 0.0658779344 - - conserved hypothetical protein [Ricinus communis]
3 Hb_151616_010 0.0881075592 - - -
4 Hb_000167_090 0.0957279341 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000286_210 0.0978604517 - - hypothetical protein EUGRSUZ_C00018 [Eucalyptus grandis]
6 Hb_001808_010 0.1092764109 - - PREDICTED: dirigent protein 23-like [Jatropha curcas]
7 Hb_039410_010 0.1097697834 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
8 Hb_002639_120 0.1122016827 - - unnamed protein product [Vitis vinifera]
9 Hb_001957_050 0.1134344853 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
10 Hb_006590_030 0.1143228523 - - unknown [Populus trichocarpa]
11 Hb_004007_190 0.1157170694 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein AZF2-like [Jatropha curcas]
12 Hb_002548_010 0.1181830076 - - hypothetical protein EUGRSUZ_L00530 [Eucalyptus grandis]
13 Hb_005040_010 0.1184983286 - - hypothetical protein RCOM_1110360 [Ricinus communis]
14 Hb_002025_120 0.120436411 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105634212 [Jatropha curcas]
15 Hb_001318_180 0.1298662143 - - PREDICTED: protein NIM1-INTERACTING 1 [Jatropha curcas]
16 Hb_001414_120 0.1351886961 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
17 Hb_001059_050 0.1359477064 - - PREDICTED: putative F-box/LRR-repeat protein At3g18150 [Jatropha curcas]
18 Hb_000203_090 0.1362334845 - - hypothetical protein POPTR_0013s04080g [Populus trichocarpa]
19 Hb_002869_040 0.1375115671 - - PREDICTED: metal tolerance protein 4 [Jatropha curcas]
20 Hb_001227_010 0.1381426417 transcription factor TF Family: TCP hypothetical protein POPTR_0015s03140g [Populus trichocarpa]

Gene co-expression network

sample Hb_002422_010 Hb_002422_010 Hb_003012_010 Hb_003012_010 Hb_002422_010--Hb_003012_010 Hb_151616_010 Hb_151616_010 Hb_002422_010--Hb_151616_010 Hb_000167_090 Hb_000167_090 Hb_002422_010--Hb_000167_090 Hb_000286_210 Hb_000286_210 Hb_002422_010--Hb_000286_210 Hb_001808_010 Hb_001808_010 Hb_002422_010--Hb_001808_010 Hb_039410_010 Hb_039410_010 Hb_002422_010--Hb_039410_010 Hb_003012_010--Hb_000286_210 Hb_003012_010--Hb_151616_010 Hb_003012_010--Hb_001808_010 Hb_002639_120 Hb_002639_120 Hb_003012_010--Hb_002639_120 Hb_001318_180 Hb_001318_180 Hb_003012_010--Hb_001318_180 Hb_151616_010--Hb_000286_210 Hb_001059_050 Hb_001059_050 Hb_151616_010--Hb_001059_050 Hb_151616_010--Hb_002639_120 Hb_132517_010 Hb_132517_010 Hb_151616_010--Hb_132517_010 Hb_002548_010 Hb_002548_010 Hb_000167_090--Hb_002548_010 Hb_000167_090--Hb_039410_010 Hb_000203_090 Hb_000203_090 Hb_000167_090--Hb_000203_090 Hb_001104_250 Hb_001104_250 Hb_000167_090--Hb_001104_250 Hb_000769_050 Hb_000769_050 Hb_000167_090--Hb_000769_050 Hb_000286_210--Hb_001059_050 Hb_021443_020 Hb_021443_020 Hb_000286_210--Hb_021443_020 Hb_001213_080 Hb_001213_080 Hb_000286_210--Hb_001213_080 Hb_000286_210--Hb_002639_120 Hb_014214_010 Hb_014214_010 Hb_001808_010--Hb_014214_010 Hb_000433_060 Hb_000433_060 Hb_001808_010--Hb_000433_060 Hb_000373_110 Hb_000373_110 Hb_001808_010--Hb_000373_110 Hb_005054_010 Hb_005054_010 Hb_001808_010--Hb_005054_010 Hb_039410_010--Hb_000203_090 Hb_165552_020 Hb_165552_020 Hb_039410_010--Hb_165552_020 Hb_005040_010 Hb_005040_010 Hb_039410_010--Hb_005040_010 Hb_001957_050 Hb_001957_050 Hb_039410_010--Hb_001957_050 Hb_003602_080 Hb_003602_080 Hb_039410_010--Hb_003602_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.22558 0.126448 1.51755 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0399531 0

CAGE analysis