Hb_002639_120

Information

Type -
Description -
Location Contig2639: 114461-131688
Sequence    

Annotation

kegg
ID rcu:RCOM_1600220
description amino acid transporter, putative
nr
ID CBI18883.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q9SX98
description Lysine histidine transporter-like 8 OS=Arabidopsis thaliana GN=AATL1 PE=1 SV=1
trembl
ID F6H0C2
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g00320 PE=4 SV=1
Gene Ontology
ID GO:0016021
description lysine histidine transporter-like 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27569: 115499-117119 , PASA_asmbl_27571: 117207-117543
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002639_120 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_006890_050 0.0864366082 transcription factor TF Family: TCP PREDICTED: transcription factor CYCLOIDEA [Jatropha curcas]
3 Hb_151616_010 0.0867060053 - - -
4 Hb_002025_120 0.0904931137 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105634212 [Jatropha curcas]
5 Hb_001227_010 0.0955275998 transcription factor TF Family: TCP hypothetical protein POPTR_0015s03140g [Populus trichocarpa]
6 Hb_000286_210 0.097158437 - - hypothetical protein EUGRSUZ_C00018 [Eucalyptus grandis]
7 Hb_000702_040 0.1050969252 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
8 Hb_021443_020 0.108754302 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
9 Hb_001610_050 0.1099689323 - - PREDICTED: subtilisin-like protease-like [Solanum tuberosum]
10 Hb_001059_050 0.1101283733 - - PREDICTED: putative F-box/LRR-repeat protein At3g18150 [Jatropha curcas]
11 Hb_002422_010 0.1122016827 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
12 Hb_004007_190 0.1123906795 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein AZF2-like [Jatropha curcas]
13 Hb_132517_010 0.1189211071 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like isoform X3 [Populus euphratica]
14 Hb_003012_010 0.1202669694 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005687_060 0.1220810901 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X1 [Jatropha curcas]
16 Hb_006816_540 0.1264707218 - - PREDICTED: bidirectional sugar transporter SWEET16-like [Jatropha curcas]
17 Hb_001318_180 0.1272656779 - - PREDICTED: protein NIM1-INTERACTING 1 [Jatropha curcas]
18 Hb_004659_110 0.1275841184 - - PREDICTED: BURP domain-containing protein 3-like [Jatropha curcas]
19 Hb_005389_090 0.127626834 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA27, putative [Ricinus communis]
20 Hb_007885_120 0.1298846616 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_002639_120 Hb_002639_120 Hb_006890_050 Hb_006890_050 Hb_002639_120--Hb_006890_050 Hb_151616_010 Hb_151616_010 Hb_002639_120--Hb_151616_010 Hb_002025_120 Hb_002025_120 Hb_002639_120--Hb_002025_120 Hb_001227_010 Hb_001227_010 Hb_002639_120--Hb_001227_010 Hb_000286_210 Hb_000286_210 Hb_002639_120--Hb_000286_210 Hb_000702_040 Hb_000702_040 Hb_002639_120--Hb_000702_040 Hb_007885_120 Hb_007885_120 Hb_006890_050--Hb_007885_120 Hb_000840_220 Hb_000840_220 Hb_006890_050--Hb_000840_220 Hb_006816_540 Hb_006816_540 Hb_006890_050--Hb_006816_540 Hb_006890_050--Hb_000702_040 Hb_006890_050--Hb_001227_010 Hb_151616_010--Hb_000286_210 Hb_001059_050 Hb_001059_050 Hb_151616_010--Hb_001059_050 Hb_002422_010 Hb_002422_010 Hb_151616_010--Hb_002422_010 Hb_132517_010 Hb_132517_010 Hb_151616_010--Hb_132517_010 Hb_003012_010 Hb_003012_010 Hb_151616_010--Hb_003012_010 Hb_004659_110 Hb_004659_110 Hb_002025_120--Hb_004659_110 Hb_004007_190 Hb_004007_190 Hb_002025_120--Hb_004007_190 Hb_012395_260 Hb_012395_260 Hb_002025_120--Hb_012395_260 Hb_002025_120--Hb_002422_010 Hb_002025_120--Hb_000702_040 Hb_021443_020 Hb_021443_020 Hb_001227_010--Hb_021443_020 Hb_001227_010--Hb_151616_010 Hb_001227_010--Hb_132517_010 Hb_001610_050 Hb_001610_050 Hb_001227_010--Hb_001610_050 Hb_000286_210--Hb_001059_050 Hb_000286_210--Hb_021443_020 Hb_000286_210--Hb_003012_010 Hb_001213_080 Hb_001213_080 Hb_000286_210--Hb_001213_080 Hb_000702_040--Hb_001610_050 Hb_004586_230 Hb_004586_230 Hb_000702_040--Hb_004586_230 Hb_001587_220 Hb_001587_220 Hb_000702_040--Hb_001587_220 Hb_005892_010 Hb_005892_010 Hb_000702_040--Hb_005892_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.83873 0.52161 6.37346 0 0.0127407
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0159946 0 0 0.524461 0.16084

CAGE analysis