Hb_004659_110

Information

Type -
Description -
Location Contig4659: 82405-83178
Sequence    

Annotation

kegg
ID rcu:RCOM_0937150
description Dehydration-responsive protein RD22 precursor, putative
nr
ID XP_012069789.1
description PREDICTED: BURP domain-containing protein 3-like [Jatropha curcas]
swissprot
ID Q942D4
description BURP domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=BURP3 PE=2 SV=1
trembl
ID A0A067LCQ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10076 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44076: 82129-82645 , PASA_asmbl_44077: 82760-83394
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004659_110 0.0 - - PREDICTED: BURP domain-containing protein 3-like [Jatropha curcas]
2 Hb_002025_120 0.0561007056 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105634212 [Jatropha curcas]
3 Hb_012395_260 0.1089310274 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
4 Hb_004007_190 0.1102717795 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein AZF2-like [Jatropha curcas]
5 Hb_009787_020 0.116911601 - - PREDICTED: cytochrome P450 705A5-like [Jatropha curcas]
6 Hb_010267_030 0.1240939653 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
7 Hb_000201_070 0.124853949 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
8 Hb_172240_010 0.1250151793 - - PREDICTED: uncharacterized protein LOC105795660 [Gossypium raimondii]
9 Hb_002639_120 0.1275841184 - - unnamed protein product [Vitis vinifera]
10 Hb_007007_110 0.1277601574 - - hypothetical protein JCGZ_14479 [Jatropha curcas]
11 Hb_003031_070 0.128921969 - - PREDICTED: cysteine-rich repeat secretory protein 55-like [Jatropha curcas]
12 Hb_000702_040 0.1294544093 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
13 Hb_047725_010 0.1344869853 - - ceramidase, putative [Ricinus communis]
14 Hb_005183_010 0.1391112445 - - PREDICTED: probable calcium-binding protein CML17 [Malus domestica]
15 Hb_000604_050 0.1425724098 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
16 Hb_000417_230 0.1439113433 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004586_230 0.1468631295 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003800_010 0.1468926827 - - PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]
19 Hb_011101_010 0.1490447783 - - hypothetical protein JCGZ_25132 [Jatropha curcas]
20 Hb_000252_190 0.1517815978 - - PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas]

Gene co-expression network

sample Hb_004659_110 Hb_004659_110 Hb_002025_120 Hb_002025_120 Hb_004659_110--Hb_002025_120 Hb_012395_260 Hb_012395_260 Hb_004659_110--Hb_012395_260 Hb_004007_190 Hb_004007_190 Hb_004659_110--Hb_004007_190 Hb_009787_020 Hb_009787_020 Hb_004659_110--Hb_009787_020 Hb_010267_030 Hb_010267_030 Hb_004659_110--Hb_010267_030 Hb_000201_070 Hb_000201_070 Hb_004659_110--Hb_000201_070 Hb_002025_120--Hb_004007_190 Hb_002639_120 Hb_002639_120 Hb_002025_120--Hb_002639_120 Hb_002025_120--Hb_012395_260 Hb_002422_010 Hb_002422_010 Hb_002025_120--Hb_002422_010 Hb_000702_040 Hb_000702_040 Hb_002025_120--Hb_000702_040 Hb_004586_230 Hb_004586_230 Hb_012395_260--Hb_004586_230 Hb_012395_260--Hb_000201_070 Hb_000604_050 Hb_000604_050 Hb_012395_260--Hb_000604_050 Hb_012395_260--Hb_000702_040 Hb_001318_180 Hb_001318_180 Hb_004007_190--Hb_001318_180 Hb_003529_010 Hb_003529_010 Hb_004007_190--Hb_003529_010 Hb_001675_260 Hb_001675_260 Hb_004007_190--Hb_001675_260 Hb_000021_010 Hb_000021_010 Hb_004007_190--Hb_000021_010 Hb_004007_190--Hb_000604_050 Hb_003031_070 Hb_003031_070 Hb_009787_020--Hb_003031_070 Hb_007885_120 Hb_007885_120 Hb_009787_020--Hb_007885_120 Hb_047725_010 Hb_047725_010 Hb_009787_020--Hb_047725_010 Hb_009787_020--Hb_000702_040 Hb_007007_110 Hb_007007_110 Hb_009787_020--Hb_007007_110 Hb_010267_030--Hb_000201_070 Hb_005048_090 Hb_005048_090 Hb_010267_030--Hb_005048_090 Hb_000172_070 Hb_000172_070 Hb_010267_030--Hb_000172_070 Hb_005618_010 Hb_005618_010 Hb_010267_030--Hb_005618_010 Hb_002170_010 Hb_002170_010 Hb_010267_030--Hb_002170_010 Hb_112145_010 Hb_112145_010 Hb_010267_030--Hb_112145_010 Hb_006951_010 Hb_006951_010 Hb_000201_070--Hb_006951_010 Hb_000201_070--Hb_112145_010 Hb_155015_020 Hb_155015_020 Hb_000201_070--Hb_155015_020 Hb_172240_010 Hb_172240_010 Hb_000201_070--Hb_172240_010 Hb_002186_030 Hb_002186_030 Hb_000201_070--Hb_002186_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 36.896 4.04222 33.0944 0 0.0271017
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0554533 0 0.808984 3.32817

CAGE analysis