Hb_047725_010

Information

Type -
Description -
Location Contig47725: 261-1644
Sequence    

Annotation

kegg
ID rcu:RCOM_1600200
description ceramidase, putative
nr
ID XP_002510635.1
description ceramidase, putative [Ricinus communis]
swissprot
ID Q304B9
description Neutral ceramidase OS=Arabidopsis thaliana GN=At2g38010 PE=3 SV=1
trembl
ID B9R8J2
description Ceramidase, putative OS=Ricinus communis GN=RCOM_1600200 PE=4 SV=1
Gene Ontology
ID GO:0017040
description neutral ceramidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_047725_010 0.0 - - ceramidase, putative [Ricinus communis]
2 Hb_003031_070 0.0596433127 - - PREDICTED: cysteine-rich repeat secretory protein 55-like [Jatropha curcas]
3 Hb_007007_110 0.0600914552 - - hypothetical protein JCGZ_14479 [Jatropha curcas]
4 Hb_000318_320 0.1214552014 - - PREDICTED: transmembrane protein 45B [Jatropha curcas]
5 Hb_009787_020 0.1223274973 - - PREDICTED: cytochrome P450 705A5-like [Jatropha curcas]
6 Hb_077562_010 0.124833628 - - PREDICTED: WAT1-related protein At5g07050 [Jatropha curcas]
7 Hb_004659_110 0.1344869853 - - PREDICTED: BURP domain-containing protein 3-like [Jatropha curcas]
8 Hb_000983_180 0.1350397096 - - cytochrome P450, putative [Ricinus communis]
9 Hb_000413_260 0.1412149164 - - kinase, putative [Ricinus communis]
10 Hb_002025_120 0.1441511046 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105634212 [Jatropha curcas]
11 Hb_000984_120 0.1446120499 - - receptor protein kinase, putative [Ricinus communis]
12 Hb_091826_010 0.1450196963 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
13 Hb_011609_060 0.1474651812 - - PREDICTED: cytokinin hydroxylase [Jatropha curcas]
14 Hb_005183_010 0.1511838395 - - PREDICTED: probable calcium-binding protein CML17 [Malus domestica]
15 Hb_005366_030 0.1518941059 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
16 Hb_019135_030 0.151913299 - - putative mitogen-activated protein kinase 1 [Populus trichocarpa]
17 Hb_081287_010 0.1519467944 - - PREDICTED: alpha-dioxygenase 2 [Jatropha curcas]
18 Hb_110587_010 0.1520583054 - - unnamed protein product [Coffea canephora]
19 Hb_135513_010 0.1522605198 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_081065_010 0.1524357097 - - hypothetical protein PHAVU_001G084100g, partial [Phaseolus vulgaris]

Gene co-expression network

sample Hb_047725_010 Hb_047725_010 Hb_003031_070 Hb_003031_070 Hb_047725_010--Hb_003031_070 Hb_007007_110 Hb_007007_110 Hb_047725_010--Hb_007007_110 Hb_000318_320 Hb_000318_320 Hb_047725_010--Hb_000318_320 Hb_009787_020 Hb_009787_020 Hb_047725_010--Hb_009787_020 Hb_077562_010 Hb_077562_010 Hb_047725_010--Hb_077562_010 Hb_004659_110 Hb_004659_110 Hb_047725_010--Hb_004659_110 Hb_003031_070--Hb_007007_110 Hb_003031_070--Hb_009787_020 Hb_007885_120 Hb_007885_120 Hb_003031_070--Hb_007885_120 Hb_003031_070--Hb_004659_110 Hb_002025_120 Hb_002025_120 Hb_003031_070--Hb_002025_120 Hb_007007_110--Hb_000318_320 Hb_000413_260 Hb_000413_260 Hb_007007_110--Hb_000413_260 Hb_007007_110--Hb_004659_110 Hb_011609_060 Hb_011609_060 Hb_007007_110--Hb_011609_060 Hb_000318_320--Hb_077562_010 Hb_002107_080 Hb_002107_080 Hb_000318_320--Hb_002107_080 Hb_000984_120 Hb_000984_120 Hb_000318_320--Hb_000984_120 Hb_002078_210 Hb_002078_210 Hb_000318_320--Hb_002078_210 Hb_000318_320--Hb_011609_060 Hb_009787_020--Hb_004659_110 Hb_009787_020--Hb_007885_120 Hb_000702_040 Hb_000702_040 Hb_009787_020--Hb_000702_040 Hb_009787_020--Hb_007007_110 Hb_004607_180 Hb_004607_180 Hb_077562_010--Hb_004607_180 Hb_000840_230 Hb_000840_230 Hb_077562_010--Hb_000840_230 Hb_002639_090 Hb_002639_090 Hb_077562_010--Hb_002639_090 Hb_001998_130 Hb_001998_130 Hb_077562_010--Hb_001998_130 Hb_004659_110--Hb_002025_120 Hb_012395_260 Hb_012395_260 Hb_004659_110--Hb_012395_260 Hb_004007_190 Hb_004007_190 Hb_004659_110--Hb_004007_190 Hb_010267_030 Hb_010267_030 Hb_004659_110--Hb_010267_030 Hb_000201_070 Hb_000201_070 Hb_004659_110--Hb_000201_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.42986 0.0716485 3.12167 0 0.0264616
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0438515 0.21703

CAGE analysis