Hb_002639_090

Information

Type -
Description -
Location Contig2639: 84354-87490
Sequence    

Annotation

kegg
ID rcu:RCOM_1600200
description ceramidase, putative
nr
ID KDP36843.1
description hypothetical protein JCGZ_08134 [Jatropha curcas]
swissprot
ID Q304B9
description Neutral ceramidase OS=Arabidopsis thaliana GN=At2g38010 PE=3 SV=1
trembl
ID A0A067KPB8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08134 PE=4 SV=1
Gene Ontology
ID GO:0017040
description neutral ceramidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002639_090 0.0 - - hypothetical protein JCGZ_08134 [Jatropha curcas]
2 Hb_000840_230 0.0905492523 - - RING-H2 finger protein ATL1L, putative [Ricinus communis]
3 Hb_000072_310 0.0983375094 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 43-like [Jatropha curcas]
4 Hb_077562_010 0.1121962711 - - PREDICTED: WAT1-related protein At5g07050 [Jatropha curcas]
5 Hb_052530_030 0.1139063938 - - PREDICTED: cytochrome P450 78A9 [Jatropha curcas]
6 Hb_009393_010 0.1208350246 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
7 Hb_011805_060 0.1211932569 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
8 Hb_000318_320 0.1220912559 - - PREDICTED: transmembrane protein 45B [Jatropha curcas]
9 Hb_005588_140 0.123370866 - - conserved hypothetical protein [Ricinus communis]
10 Hb_013862_010 0.1321291133 - - PREDICTED: uncharacterized protein LOC105650642 [Jatropha curcas]
11 Hb_004607_180 0.1327546657 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007371_010 0.1393819518 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT-like [Populus euphratica]
13 Hb_170979_010 0.1453312426 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
14 Hb_107495_050 0.1460477179 transcription factor TF Family: MIKC mads box protein, putative [Ricinus communis]
15 Hb_008296_010 0.1476207259 - - -
16 Hb_009230_050 0.1476400879 - - PREDICTED: transcription factor bHLH113-like [Jatropha curcas]
17 Hb_001784_010 0.1476493252 - - nutrient reservoir, putative [Ricinus communis]
18 Hb_010615_010 0.1478830092 - - PREDICTED: reticuline oxidase-like protein [Jatropha curcas]
19 Hb_000103_280 0.1482986527 transcription factor TF Family: HSF Heat shock factor protein HSF30, putative [Ricinus communis]
20 Hb_001998_130 0.1486103647 transcription factor TF Family: WRKY WRKY transcription factor 35 family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_002639_090 Hb_002639_090 Hb_000840_230 Hb_000840_230 Hb_002639_090--Hb_000840_230 Hb_000072_310 Hb_000072_310 Hb_002639_090--Hb_000072_310 Hb_077562_010 Hb_077562_010 Hb_002639_090--Hb_077562_010 Hb_052530_030 Hb_052530_030 Hb_002639_090--Hb_052530_030 Hb_009393_010 Hb_009393_010 Hb_002639_090--Hb_009393_010 Hb_011805_060 Hb_011805_060 Hb_002639_090--Hb_011805_060 Hb_000840_230--Hb_077562_010 Hb_000840_230--Hb_000072_310 Hb_000318_320 Hb_000318_320 Hb_000840_230--Hb_000318_320 Hb_005588_140 Hb_005588_140 Hb_000840_230--Hb_005588_140 Hb_000840_230--Hb_009393_010 Hb_000072_310--Hb_005588_140 Hb_000072_310--Hb_052530_030 Hb_000072_310--Hb_000318_320 Hb_107495_050 Hb_107495_050 Hb_000072_310--Hb_107495_050 Hb_077562_010--Hb_000318_320 Hb_004607_180 Hb_004607_180 Hb_077562_010--Hb_004607_180 Hb_001998_130 Hb_001998_130 Hb_077562_010--Hb_001998_130 Hb_047725_010 Hb_047725_010 Hb_077562_010--Hb_047725_010 Hb_023675_020 Hb_023675_020 Hb_052530_030--Hb_023675_020 Hb_000103_280 Hb_000103_280 Hb_052530_030--Hb_000103_280 Hb_117335_020 Hb_117335_020 Hb_052530_030--Hb_117335_020 Hb_010615_010 Hb_010615_010 Hb_052530_030--Hb_010615_010 Hb_001784_010 Hb_001784_010 Hb_052530_030--Hb_001784_010 Hb_025477_030 Hb_025477_030 Hb_009393_010--Hb_025477_030 Hb_013726_100 Hb_013726_100 Hb_009393_010--Hb_013726_100 Hb_000256_050 Hb_000256_050 Hb_009393_010--Hb_000256_050 Hb_167802_010 Hb_167802_010 Hb_009393_010--Hb_167802_010 Hb_002475_110 Hb_002475_110 Hb_009393_010--Hb_002475_110 Hb_000134_010 Hb_000134_010 Hb_009393_010--Hb_000134_010 Hb_011805_060--Hb_002475_110 Hb_000610_030 Hb_000610_030 Hb_011805_060--Hb_000610_030 Hb_011805_060--Hb_013726_100 Hb_002311_490 Hb_002311_490 Hb_011805_060--Hb_002311_490 Hb_011671_290 Hb_011671_290 Hb_011805_060--Hb_011671_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.05044 0.0513442 0.852966 0.031232 0.010831
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0396221 0.0419171

CAGE analysis