Hb_107495_050

Information

Type transcription factor
Description TF Family: MIKC
Location Contig107495: 56933-61255
Sequence    

Annotation

kegg
ID rcu:RCOM_1030190
description mads box protein, putative (EC:1.3.1.74)
nr
ID XP_002526423.1
description mads box protein, putative [Ricinus communis]
swissprot
ID Q38841
description Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2
trembl
ID B9SKA4
description Mads box protein, putative OS=Ricinus communis GN=RCOM_1030190 PE=4 SV=1
Gene Ontology
ID GO:0005634
description agamous-like mads-box protein agl12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02320: 60653-61247
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_107495_050 0.0 transcription factor TF Family: MIKC mads box protein, putative [Ricinus communis]
2 Hb_005588_140 0.1102131826 - - conserved hypothetical protein [Ricinus communis]
3 Hb_083862_010 0.131175842 - - hypothetical protein JCGZ_17956 [Jatropha curcas]
4 Hb_000072_310 0.1316526266 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 43-like [Jatropha curcas]
5 Hb_000087_180 0.1430176832 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002639_090 0.1460477179 - - hypothetical protein JCGZ_08134 [Jatropha curcas]
7 Hb_000506_140 0.1588565546 - - hypothetical protein PRUPE_ppb019425mg [Prunus persica]
8 Hb_017434_020 0.1626516957 transcription factor TF Family: C2H2 Zinc finger protein 4 [Populus trichocarpa]
9 Hb_000840_230 0.16297527 - - RING-H2 finger protein ATL1L, putative [Ricinus communis]
10 Hb_000029_280 0.1671497577 - - PREDICTED: uncharacterized protein LOC105631804 [Jatropha curcas]
11 Hb_183539_010 0.1732577539 - - hypothetical protein POPTR_0005s04441g [Populus trichocarpa]
12 Hb_000318_320 0.1768087807 - - PREDICTED: transmembrane protein 45B [Jatropha curcas]
13 Hb_127628_010 0.1770118314 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
14 Hb_001529_020 0.1772751546 - - ankyrin repeat-containing protein, putative [Ricinus communis]
15 Hb_002311_490 0.183496947 - - PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]
16 Hb_003893_020 0.1842499639 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2 [Jatropha curcas]
17 Hb_004607_180 0.1850329517 - - conserved hypothetical protein [Ricinus communis]
18 Hb_011805_060 0.1850731521 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
19 Hb_077562_010 0.1863055877 - - PREDICTED: WAT1-related protein At5g07050 [Jatropha curcas]
20 Hb_012423_020 0.1889200494 - - hypothetical protein JCGZ_20730 [Jatropha curcas]

Gene co-expression network

sample Hb_107495_050 Hb_107495_050 Hb_005588_140 Hb_005588_140 Hb_107495_050--Hb_005588_140 Hb_083862_010 Hb_083862_010 Hb_107495_050--Hb_083862_010 Hb_000072_310 Hb_000072_310 Hb_107495_050--Hb_000072_310 Hb_000087_180 Hb_000087_180 Hb_107495_050--Hb_000087_180 Hb_002639_090 Hb_002639_090 Hb_107495_050--Hb_002639_090 Hb_000506_140 Hb_000506_140 Hb_107495_050--Hb_000506_140 Hb_005588_140--Hb_000072_310 Hb_052530_030 Hb_052530_030 Hb_005588_140--Hb_052530_030 Hb_005588_140--Hb_002639_090 Hb_000840_230 Hb_000840_230 Hb_005588_140--Hb_000840_230 Hb_022534_020 Hb_022534_020 Hb_005588_140--Hb_022534_020 Hb_004162_030 Hb_004162_030 Hb_083862_010--Hb_004162_030 Hb_002422_030 Hb_002422_030 Hb_083862_010--Hb_002422_030 Hb_012423_020 Hb_012423_020 Hb_083862_010--Hb_012423_020 Hb_083862_010--Hb_002639_090 Hb_083862_010--Hb_000072_310 Hb_000072_310--Hb_002639_090 Hb_000072_310--Hb_052530_030 Hb_000072_310--Hb_000840_230 Hb_000318_320 Hb_000318_320 Hb_000072_310--Hb_000318_320 Hb_017434_020 Hb_017434_020 Hb_000087_180--Hb_017434_020 Hb_005183_010 Hb_005183_010 Hb_000087_180--Hb_005183_010 Hb_004968_050 Hb_004968_050 Hb_000087_180--Hb_004968_050 Hb_000506_130 Hb_000506_130 Hb_000087_180--Hb_000506_130 Hb_005714_140 Hb_005714_140 Hb_000087_180--Hb_005714_140 Hb_000417_230 Hb_000417_230 Hb_000087_180--Hb_000417_230 Hb_002639_090--Hb_000840_230 Hb_077562_010 Hb_077562_010 Hb_002639_090--Hb_077562_010 Hb_002639_090--Hb_052530_030 Hb_009393_010 Hb_009393_010 Hb_002639_090--Hb_009393_010 Hb_011805_060 Hb_011805_060 Hb_002639_090--Hb_011805_060 Hb_000796_200 Hb_000796_200 Hb_000506_140--Hb_000796_200 Hb_002311_490 Hb_002311_490 Hb_000506_140--Hb_002311_490 Hb_016404_010 Hb_016404_010 Hb_000506_140--Hb_016404_010 Hb_000465_330 Hb_000465_330 Hb_000506_140--Hb_000465_330 Hb_000506_140--Hb_000506_130 Hb_116349_090 Hb_116349_090 Hb_000506_140--Hb_116349_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.21283 12.3797 0.303768 3.52497 0.656791 0.387812
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.222649 0.301166

CAGE analysis