Hb_005183_010

Information

Type -
Description -
Location Contig5183: 1698-1979
Sequence    

Annotation

kegg
ID mdm:103441125
description probable calcium-binding protein CML17
nr
ID XP_008378047.1
description PREDICTED: probable calcium-binding protein CML17 [Malus domestica]
swissprot
ID -
description -
trembl
ID B9MVN9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s03070g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005183_010 0.0 - - PREDICTED: probable calcium-binding protein CML17 [Malus domestica]
2 Hb_000087_180 0.0982633501 - - conserved hypothetical protein [Ricinus communis]
3 Hb_012395_260 0.1210865509 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
4 Hb_004968_050 0.1238059059 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
5 Hb_000668_170 0.123847121 - - sulfate transporter, putative [Ricinus communis]
6 Hb_000417_230 0.1308774959 - - conserved hypothetical protein [Ricinus communis]
7 Hb_017434_020 0.133901894 transcription factor TF Family: C2H2 Zinc finger protein 4 [Populus trichocarpa]
8 Hb_007007_110 0.1340370417 - - hypothetical protein JCGZ_14479 [Jatropha curcas]
9 Hb_002107_080 0.1350181442 - - JHL20J20.3 [Jatropha curcas]
10 Hb_004659_110 0.1391112445 - - PREDICTED: BURP domain-containing protein 3-like [Jatropha curcas]
11 Hb_000318_320 0.1392999579 - - PREDICTED: transmembrane protein 45B [Jatropha curcas]
12 Hb_000029_280 0.1414431835 - - PREDICTED: uncharacterized protein LOC105631804 [Jatropha curcas]
13 Hb_002025_120 0.1480429982 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105634212 [Jatropha curcas]
14 Hb_047725_010 0.1511838395 - - ceramidase, putative [Ricinus communis]
15 Hb_087468_010 0.1543426112 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
16 Hb_003800_010 0.1554545051 - - PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]
17 Hb_004586_230 0.1597194394 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005687_060 0.1605332727 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X1 [Jatropha curcas]
19 Hb_055993_010 0.1607595675 - - PREDICTED: uncharacterized protein LOC104883809 [Beta vulgaris subsp. vulgaris]
20 Hb_073973_180 0.1607901223 - - PREDICTED: WAT1-related protein At4g08290 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_005183_010 Hb_005183_010 Hb_000087_180 Hb_000087_180 Hb_005183_010--Hb_000087_180 Hb_012395_260 Hb_012395_260 Hb_005183_010--Hb_012395_260 Hb_004968_050 Hb_004968_050 Hb_005183_010--Hb_004968_050 Hb_000668_170 Hb_000668_170 Hb_005183_010--Hb_000668_170 Hb_000417_230 Hb_000417_230 Hb_005183_010--Hb_000417_230 Hb_017434_020 Hb_017434_020 Hb_005183_010--Hb_017434_020 Hb_000087_180--Hb_017434_020 Hb_000087_180--Hb_004968_050 Hb_000506_130 Hb_000506_130 Hb_000087_180--Hb_000506_130 Hb_005714_140 Hb_005714_140 Hb_000087_180--Hb_005714_140 Hb_000087_180--Hb_000417_230 Hb_004586_230 Hb_004586_230 Hb_012395_260--Hb_004586_230 Hb_004659_110 Hb_004659_110 Hb_012395_260--Hb_004659_110 Hb_000201_070 Hb_000201_070 Hb_012395_260--Hb_000201_070 Hb_000604_050 Hb_000604_050 Hb_012395_260--Hb_000604_050 Hb_002025_120 Hb_002025_120 Hb_012395_260--Hb_002025_120 Hb_000702_040 Hb_000702_040 Hb_012395_260--Hb_000702_040 Hb_002107_080 Hb_002107_080 Hb_004968_050--Hb_002107_080 Hb_004968_050--Hb_000417_230 Hb_073973_180 Hb_073973_180 Hb_004968_050--Hb_073973_180 Hb_000318_320 Hb_000318_320 Hb_004968_050--Hb_000318_320 Hb_000029_280 Hb_000029_280 Hb_000668_170--Hb_000029_280 Hb_010142_040 Hb_010142_040 Hb_000668_170--Hb_010142_040 Hb_001213_140 Hb_001213_140 Hb_000668_170--Hb_001213_140 Hb_000827_090 Hb_000827_090 Hb_000668_170--Hb_000827_090 Hb_000668_170--Hb_000087_180 Hb_094839_010 Hb_094839_010 Hb_000417_230--Hb_094839_010 Hb_000417_230--Hb_002107_080 Hb_000417_230--Hb_073973_180 Hb_010573_030 Hb_010573_030 Hb_000417_230--Hb_010573_030 Hb_003071_040 Hb_003071_040 Hb_000417_230--Hb_003071_040 Hb_183539_010 Hb_183539_010 Hb_017434_020--Hb_183539_010 Hb_017434_020--Hb_000506_130 Hb_000506_140 Hb_000506_140 Hb_017434_020--Hb_000506_140 Hb_004607_180 Hb_004607_180 Hb_017434_020--Hb_004607_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.29438 446.735 39.5765 303.287 8.58284 11.5549
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.347207 0 8.09318 21.6741

CAGE analysis