Hb_012395_260

Information

Type transcription factor
Description TF Family: AUX/IAA
Location Contig12395: 132871-134952
Sequence    

Annotation

kegg
ID rcu:RCOM_1217330
description Auxin-responsive protein IAA13, putative
nr
ID XP_012077608.1
description PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
swissprot
ID Q38831
description Auxin-responsive protein IAA13 OS=Arabidopsis thaliana GN=IAA13 PE=1 SV=2
trembl
ID A0A067KM23
description Auxin-responsive protein OS=Jatropha curcas GN=JCGZ_12874 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin-responsive protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07292: 132886-134752 , PASA_asmbl_07293: 132886-134752
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012395_260 0.0 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
2 Hb_004586_230 0.0834905678 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004659_110 0.1089310274 - - PREDICTED: BURP domain-containing protein 3-like [Jatropha curcas]
4 Hb_000201_070 0.1145063639 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
5 Hb_000604_050 0.1171563702 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
6 Hb_002025_120 0.1177932509 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105634212 [Jatropha curcas]
7 Hb_000702_040 0.1192189696 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
8 Hb_000365_190 0.1204197425 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
9 Hb_005183_010 0.1210865509 - - PREDICTED: probable calcium-binding protein CML17 [Malus domestica]
10 Hb_005389_090 0.1269140811 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA27, putative [Ricinus communis]
11 Hb_001195_650 0.1274331749 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
12 Hb_006573_060 0.127526205 - - hypothetical protein [Bruguiera gymnorhiza]
13 Hb_000777_020 0.1311073023 - - PREDICTED: 3-ketoacyl-CoA synthase 11 [Jatropha curcas]
14 Hb_010267_030 0.1311524588 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
15 Hb_172240_010 0.1408372184 - - PREDICTED: uncharacterized protein LOC105795660 [Gossypium raimondii]
16 Hb_000742_260 0.1427624914 - - hypothetical protein RCOM_1336320 [Ricinus communis]
17 Hb_027905_010 0.1440744081 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
18 Hb_001587_220 0.1455856576 - - receptor protein kinase, putative [Ricinus communis]
19 Hb_005643_080 0.1467212691 - - hypothetical protein POPTR_0001s12740g [Populus trichocarpa]
20 Hb_004007_190 0.1472907358 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein AZF2-like [Jatropha curcas]

Gene co-expression network

sample Hb_012395_260 Hb_012395_260 Hb_004586_230 Hb_004586_230 Hb_012395_260--Hb_004586_230 Hb_004659_110 Hb_004659_110 Hb_012395_260--Hb_004659_110 Hb_000201_070 Hb_000201_070 Hb_012395_260--Hb_000201_070 Hb_000604_050 Hb_000604_050 Hb_012395_260--Hb_000604_050 Hb_002025_120 Hb_002025_120 Hb_012395_260--Hb_002025_120 Hb_000702_040 Hb_000702_040 Hb_012395_260--Hb_000702_040 Hb_004586_230--Hb_000702_040 Hb_000365_190 Hb_000365_190 Hb_004586_230--Hb_000365_190 Hb_001587_220 Hb_001587_220 Hb_004586_230--Hb_001587_220 Hb_006573_060 Hb_006573_060 Hb_004586_230--Hb_006573_060 Hb_001195_650 Hb_001195_650 Hb_004586_230--Hb_001195_650 Hb_004659_110--Hb_002025_120 Hb_004007_190 Hb_004007_190 Hb_004659_110--Hb_004007_190 Hb_009787_020 Hb_009787_020 Hb_004659_110--Hb_009787_020 Hb_010267_030 Hb_010267_030 Hb_004659_110--Hb_010267_030 Hb_004659_110--Hb_000201_070 Hb_000201_070--Hb_010267_030 Hb_006951_010 Hb_006951_010 Hb_000201_070--Hb_006951_010 Hb_112145_010 Hb_112145_010 Hb_000201_070--Hb_112145_010 Hb_155015_020 Hb_155015_020 Hb_000201_070--Hb_155015_020 Hb_172240_010 Hb_172240_010 Hb_000201_070--Hb_172240_010 Hb_002186_030 Hb_002186_030 Hb_000201_070--Hb_002186_030 Hb_003906_150 Hb_003906_150 Hb_000604_050--Hb_003906_150 Hb_000270_530 Hb_000270_530 Hb_000604_050--Hb_000270_530 Hb_003529_010 Hb_003529_010 Hb_000604_050--Hb_003529_010 Hb_000604_050--Hb_004007_190 Hb_103149_010 Hb_103149_010 Hb_000604_050--Hb_103149_010 Hb_008566_070 Hb_008566_070 Hb_000604_050--Hb_008566_070 Hb_002025_120--Hb_004007_190 Hb_002639_120 Hb_002639_120 Hb_002025_120--Hb_002639_120 Hb_002422_010 Hb_002422_010 Hb_002025_120--Hb_002422_010 Hb_002025_120--Hb_000702_040 Hb_001610_050 Hb_001610_050 Hb_000702_040--Hb_001610_050 Hb_000702_040--Hb_001587_220 Hb_000702_040--Hb_002639_120 Hb_006890_050 Hb_006890_050 Hb_000702_040--Hb_006890_050 Hb_005892_010 Hb_005892_010 Hb_000702_040--Hb_005892_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.710356 39.852 7.82172 36.2975 0.44304 0.204633
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.033622 0 1.8063 3.74808

CAGE analysis