Hb_000702_040

Information

Type -
Description -
Location Contig702: 56982-60965
Sequence    

Annotation

kegg
ID rcu:RCOM_0837870
description eukaryotic translation initiation factor 2c, putative
nr
ID XP_002522490.1
description eukaryotic translation initiation factor 2c, putative [Ricinus communis]
swissprot
ID Q9C793
description Protein argonaute 7 OS=Arabidopsis thaliana GN=AGO7 PE=2 SV=1
trembl
ID B9S921
description Protein argonaute OS=Ricinus communis GN=RCOM_0837870 PE=3 SV=1
Gene Ontology
ID GO:0003743
description protein argonaute 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54897: 58125-58954 , PASA_asmbl_54898: 59525-60916
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000702_040 0.0 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
2 Hb_001610_050 0.097501864 - - PREDICTED: subtilisin-like protease-like [Solanum tuberosum]
3 Hb_004586_230 0.101619026 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001587_220 0.1029159402 - - receptor protein kinase, putative [Ricinus communis]
5 Hb_002639_120 0.1050969252 - - unnamed protein product [Vitis vinifera]
6 Hb_006890_050 0.1073871908 transcription factor TF Family: TCP PREDICTED: transcription factor CYCLOIDEA [Jatropha curcas]
7 Hb_005892_010 0.1104725617 - - PREDICTED: uncharacterized protein LOC105632168 [Jatropha curcas]
8 Hb_003939_090 0.11280494 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
9 Hb_006573_060 0.1131758735 - - hypothetical protein [Bruguiera gymnorhiza]
10 Hb_012395_260 0.1192189696 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
11 Hb_000604_050 0.1214097885 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
12 Hb_002025_120 0.121974021 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105634212 [Jatropha curcas]
13 Hb_009787_020 0.125847406 - - PREDICTED: cytochrome P450 705A5-like [Jatropha curcas]
14 Hb_103149_010 0.1275104893 - - hypothetical protein CISIN_1g0397312mg, partial [Citrus sinensis]
15 Hb_005687_060 0.1285208103 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X1 [Jatropha curcas]
16 Hb_000922_290 0.1286344745 - - PREDICTED: probable boron transporter 2 [Jatropha curcas]
17 Hb_015884_010 0.1289143929 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X1 [Jatropha curcas]
18 Hb_004659_110 0.1294544093 - - PREDICTED: BURP domain-containing protein 3-like [Jatropha curcas]
19 Hb_021443_020 0.130274259 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
20 Hb_050898_010 0.1320690024 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]

Gene co-expression network

sample Hb_000702_040 Hb_000702_040 Hb_001610_050 Hb_001610_050 Hb_000702_040--Hb_001610_050 Hb_004586_230 Hb_004586_230 Hb_000702_040--Hb_004586_230 Hb_001587_220 Hb_001587_220 Hb_000702_040--Hb_001587_220 Hb_002639_120 Hb_002639_120 Hb_000702_040--Hb_002639_120 Hb_006890_050 Hb_006890_050 Hb_000702_040--Hb_006890_050 Hb_005892_010 Hb_005892_010 Hb_000702_040--Hb_005892_010 Hb_021443_020 Hb_021443_020 Hb_001610_050--Hb_021443_020 Hb_001610_050--Hb_005892_010 Hb_001610_050--Hb_002639_120 Hb_001610_050--Hb_006890_050 Hb_001227_010 Hb_001227_010 Hb_001610_050--Hb_001227_010 Hb_012395_260 Hb_012395_260 Hb_004586_230--Hb_012395_260 Hb_000365_190 Hb_000365_190 Hb_004586_230--Hb_000365_190 Hb_004586_230--Hb_001587_220 Hb_006573_060 Hb_006573_060 Hb_004586_230--Hb_006573_060 Hb_001195_650 Hb_001195_650 Hb_004586_230--Hb_001195_650 Hb_001587_220--Hb_006573_060 Hb_001587_220--Hb_005892_010 Hb_011101_010 Hb_011101_010 Hb_001587_220--Hb_011101_010 Hb_000137_030 Hb_000137_030 Hb_001587_220--Hb_000137_030 Hb_002639_120--Hb_006890_050 Hb_151616_010 Hb_151616_010 Hb_002639_120--Hb_151616_010 Hb_002025_120 Hb_002025_120 Hb_002639_120--Hb_002025_120 Hb_002639_120--Hb_001227_010 Hb_000286_210 Hb_000286_210 Hb_002639_120--Hb_000286_210 Hb_007885_120 Hb_007885_120 Hb_006890_050--Hb_007885_120 Hb_000840_220 Hb_000840_220 Hb_006890_050--Hb_000840_220 Hb_006816_540 Hb_006816_540 Hb_006890_050--Hb_006816_540 Hb_006890_050--Hb_001227_010 Hb_000922_290 Hb_000922_290 Hb_005892_010--Hb_000922_290 Hb_050898_010 Hb_050898_010 Hb_005892_010--Hb_050898_010 Hb_005892_010--Hb_000137_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0996703 11.1329 1.28252 11.9327 0.0223969 0.00513587
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.51403 1.0984

CAGE analysis