Hb_000922_290

Information

Type -
Description -
Location Contig922: 247998-254105
Sequence    

Annotation

kegg
ID rcu:RCOM_1510470
description Boron transporter, putative
nr
ID XP_012080056.1
description PREDICTED: probable boron transporter 2 [Jatropha curcas]
swissprot
ID Q9M1P7
description Probable boron transporter 2 OS=Arabidopsis thaliana GN=BOR2 PE=2 SV=1
trembl
ID A0A067KFQ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11466 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable boron transporter 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62497: 247599-248025 , PASA_asmbl_62499: 253603-254026
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000922_290 0.0 - - PREDICTED: probable boron transporter 2 [Jatropha curcas]
2 Hb_005892_010 0.0630862305 - - PREDICTED: uncharacterized protein LOC105632168 [Jatropha curcas]
3 Hb_000987_080 0.0808429799 - - light-inducible protein atls1, putative [Ricinus communis]
4 Hb_050898_010 0.0850722593 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
5 Hb_000007_210 0.0919649684 - - hypothetical protein POPTR_0010s14360g [Populus trichocarpa]
6 Hb_000656_370 0.1168591797 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
7 Hb_145139_010 0.11708832 - - PREDICTED: sugar transporter ERD6-like 5 isoform X1 [Vitis vinifera]
8 Hb_002968_010 0.118943329 - - PREDICTED: pectinesterase [Jatropha curcas]
9 Hb_000316_080 0.120740608 - - ENTH/VHS family protein [Theobroma cacao]
10 Hb_000101_140 0.1220017182 - - amino acid transporter, putative [Ricinus communis]
11 Hb_000816_050 0.1263614103 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
12 Hb_001587_220 0.1266381384 - - receptor protein kinase, putative [Ricinus communis]
13 Hb_000137_030 0.1274636956 - - PREDICTED: cysteine-rich repeat secretory protein 55-like [Citrus sinensis]
14 Hb_000702_040 0.1286344745 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
15 Hb_001610_050 0.1290349289 - - PREDICTED: subtilisin-like protease-like [Solanum tuberosum]
16 Hb_011101_010 0.1300761546 - - hypothetical protein JCGZ_25132 [Jatropha curcas]
17 Hb_000723_060 0.1310238913 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
18 Hb_005147_020 0.1396946175 - - PREDICTED: uncharacterized protein LOC105629671 [Jatropha curcas]
19 Hb_002239_030 0.1420131719 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
20 Hb_013691_040 0.1449382237 - - hypothetical protein B456_001G045900 [Gossypium raimondii]

Gene co-expression network

sample Hb_000922_290 Hb_000922_290 Hb_005892_010 Hb_005892_010 Hb_000922_290--Hb_005892_010 Hb_000987_080 Hb_000987_080 Hb_000922_290--Hb_000987_080 Hb_050898_010 Hb_050898_010 Hb_000922_290--Hb_050898_010 Hb_000007_210 Hb_000007_210 Hb_000922_290--Hb_000007_210 Hb_000656_370 Hb_000656_370 Hb_000922_290--Hb_000656_370 Hb_145139_010 Hb_145139_010 Hb_000922_290--Hb_145139_010 Hb_005892_010--Hb_050898_010 Hb_001610_050 Hb_001610_050 Hb_005892_010--Hb_001610_050 Hb_001587_220 Hb_001587_220 Hb_005892_010--Hb_001587_220 Hb_000137_030 Hb_000137_030 Hb_005892_010--Hb_000137_030 Hb_000702_040 Hb_000702_040 Hb_005892_010--Hb_000702_040 Hb_000316_080 Hb_000316_080 Hb_000987_080--Hb_000316_080 Hb_000987_080--Hb_005892_010 Hb_002241_020 Hb_002241_020 Hb_000987_080--Hb_002241_020 Hb_013691_040 Hb_013691_040 Hb_000987_080--Hb_013691_040 Hb_002110_210 Hb_002110_210 Hb_000987_080--Hb_002110_210 Hb_183209_020 Hb_183209_020 Hb_050898_010--Hb_183209_020 Hb_050898_010--Hb_000137_030 Hb_103541_010 Hb_103541_010 Hb_050898_010--Hb_103541_010 Hb_000816_050 Hb_000816_050 Hb_050898_010--Hb_000816_050 Hb_002329_030 Hb_002329_030 Hb_000007_210--Hb_002329_030 Hb_000007_210--Hb_145139_010 Hb_000007_210--Hb_005892_010 Hb_002968_010 Hb_002968_010 Hb_000007_210--Hb_002968_010 Hb_002272_070 Hb_002272_070 Hb_000007_210--Hb_002272_070 Hb_000656_370--Hb_002968_010 Hb_000101_140 Hb_000101_140 Hb_000656_370--Hb_000101_140 Hb_002236_020 Hb_002236_020 Hb_000656_370--Hb_002236_020 Hb_000656_370--Hb_145139_010 Hb_004122_020 Hb_004122_020 Hb_000656_370--Hb_004122_020 Hb_024857_010 Hb_024857_010 Hb_000656_370--Hb_024857_010 Hb_145139_010--Hb_002968_010 Hb_000072_160 Hb_000072_160 Hb_145139_010--Hb_000072_160 Hb_002097_210 Hb_002097_210 Hb_145139_010--Hb_002097_210 Hb_145139_010--Hb_002272_070 Hb_002475_010 Hb_002475_010 Hb_145139_010--Hb_002475_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00612943 28.1045 1.91539 21.6723 0.029477 0.0277061
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0138969 0.0109359 0 6.89931 4.1329

CAGE analysis