Hb_004122_020

Information

Type transcription factor
Description TF Family: ERF
Location Contig4122: 24198-24674
Sequence    

Annotation

kegg
ID pop:POPTR_0014s02530g
description dehydration responsive element binding family protein
nr
ID AGC51783.1
description ERF/AP2 domain-containing transcription factor [Manihot esculenta]
swissprot
ID Q9SNE1
description Ethylene-responsive transcription factor ERF011 OS=Arabidopsis thaliana GN=ERF011 PE=2 SV=1
trembl
ID V9M5D1
description ERF/AP2 domain-containing transcription factor OS=Manihot esculenta GN=RAP2.1 PE=2 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor erf011-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40806: 23908-24044 , PASA_asmbl_40807: 24190-25065
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004122_020 0.0 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
2 Hb_002968_010 0.084204992 - - PREDICTED: pectinesterase [Jatropha curcas]
3 Hb_000656_370 0.0907352488 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
4 Hb_006052_040 0.0916535655 - - pyruvate decarboxylase [Hevea brasiliensis]
5 Hb_006198_060 0.0927862173 - - PREDICTED: protein SULFUR DEFICIENCY-INDUCED 1 [Jatropha curcas]
6 Hb_002475_010 0.093832742 - - hypothetical protein JCGZ_22530 [Jatropha curcas]
7 Hb_000000_070 0.0969429037 - - allene oxide synthase [Hevea brasiliensis]
8 Hb_002236_020 0.1035473235 - - PREDICTED: nephrocystin-3 [Jatropha curcas]
9 Hb_006615_180 0.107180034 - - hypothetical protein B456_003G103400 [Gossypium raimondii]
10 Hb_145139_010 0.1102399668 - - PREDICTED: sugar transporter ERD6-like 5 isoform X1 [Vitis vinifera]
11 Hb_000101_140 0.1118975179 - - amino acid transporter, putative [Ricinus communis]
12 Hb_000338_030 0.1153503835 transcription factor TF Family: HB hypothetical protein JCGZ_21254 [Jatropha curcas]
13 Hb_002239_030 0.1159836601 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
14 Hb_008550_030 0.1202659943 - - PREDICTED: tonoplast dicarboxylate transporter [Jatropha curcas]
15 Hb_024857_010 0.121314806 - - glutaredoxin 2.1 [Hevea brasiliensis]
16 Hb_002097_210 0.1218613319 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007237_090 0.124100619 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002529_080 0.1259970841 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase [Jatropha curcas]
19 Hb_000094_010 0.1260916328 - - lrr receptor protein kinase, putative [Ricinus communis]
20 Hb_007305_040 0.126519865 - - Nodulin-26, putative [Ricinus communis]

Gene co-expression network

sample Hb_004122_020 Hb_004122_020 Hb_002968_010 Hb_002968_010 Hb_004122_020--Hb_002968_010 Hb_000656_370 Hb_000656_370 Hb_004122_020--Hb_000656_370 Hb_006052_040 Hb_006052_040 Hb_004122_020--Hb_006052_040 Hb_006198_060 Hb_006198_060 Hb_004122_020--Hb_006198_060 Hb_002475_010 Hb_002475_010 Hb_004122_020--Hb_002475_010 Hb_000000_070 Hb_000000_070 Hb_004122_020--Hb_000000_070 Hb_002968_010--Hb_000656_370 Hb_000101_140 Hb_000101_140 Hb_002968_010--Hb_000101_140 Hb_145139_010 Hb_145139_010 Hb_002968_010--Hb_145139_010 Hb_000072_160 Hb_000072_160 Hb_002968_010--Hb_000072_160 Hb_002968_010--Hb_002475_010 Hb_000656_370--Hb_000101_140 Hb_002236_020 Hb_002236_020 Hb_000656_370--Hb_002236_020 Hb_000656_370--Hb_145139_010 Hb_024857_010 Hb_024857_010 Hb_000656_370--Hb_024857_010 Hb_006052_040--Hb_006198_060 Hb_006052_040--Hb_002475_010 Hb_003376_150 Hb_003376_150 Hb_006052_040--Hb_003376_150 Hb_004712_140 Hb_004712_140 Hb_006052_040--Hb_004712_140 Hb_041290_030 Hb_041290_030 Hb_006052_040--Hb_041290_030 Hb_006198_060--Hb_041290_030 Hb_000123_310 Hb_000123_310 Hb_006198_060--Hb_000123_310 Hb_000338_030 Hb_000338_030 Hb_006198_060--Hb_000338_030 Hb_000579_220 Hb_000579_220 Hb_006198_060--Hb_000579_220 Hb_002475_010--Hb_145139_010 Hb_002097_210 Hb_002097_210 Hb_002475_010--Hb_002097_210 Hb_002475_010--Hb_000656_370 Hb_006615_180 Hb_006615_180 Hb_000000_070--Hb_006615_180 Hb_002529_080 Hb_002529_080 Hb_000000_070--Hb_002529_080 Hb_001568_120 Hb_001568_120 Hb_000000_070--Hb_001568_120 Hb_117127_010 Hb_117127_010 Hb_000000_070--Hb_117127_010 Hb_008667_030 Hb_008667_030 Hb_000000_070--Hb_008667_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.47679 91.2562 9.67409 28.2557 0.120628 0.248474
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.114038 0 14.6704 11.1758

CAGE analysis