Hb_006052_040

Information

Type -
Description -
Location Contig6052: 34465-37328
Sequence    

Annotation

kegg
ID tcc:TCM_021649
description Thiamine pyrophosphate dependent pyruvate decarboxylase family protein
nr
ID AIE47264.1
description pyruvate decarboxylase [Hevea brasiliensis]
swissprot
ID O82647
description Pyruvate decarboxylase 1 OS=Arabidopsis thaliana GN=PDC1 PE=2 SV=1
trembl
ID A0A068LJB0
description Pyruvate decarboxylase OS=Hevea brasiliensis GN=PDC3 PE=2 SV=1
Gene Ontology
ID GO:0000287
description pyruvate decarboxylase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50738: 34748-37300 , PASA_asmbl_50739: 37301-37447
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006052_040 0.0 - - pyruvate decarboxylase [Hevea brasiliensis]
2 Hb_006198_060 0.0823102927 - - PREDICTED: protein SULFUR DEFICIENCY-INDUCED 1 [Jatropha curcas]
3 Hb_004122_020 0.0916535655 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
4 Hb_002475_010 0.1054705814 - - hypothetical protein JCGZ_22530 [Jatropha curcas]
5 Hb_003376_150 0.1135428875 - - PREDICTED: peroxidase 21 [Jatropha curcas]
6 Hb_004712_140 0.1172961325 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
7 Hb_041290_030 0.1179396451 - - PREDICTED: uncharacterized protein LOC105640874 [Jatropha curcas]
8 Hb_008550_030 0.1251795413 - - PREDICTED: tonoplast dicarboxylate transporter [Jatropha curcas]
9 Hb_030370_070 0.1271069401 - - ATP binding protein, putative [Ricinus communis]
10 Hb_000123_310 0.1306057736 - - PREDICTED: aquaporin TIP1-3 [Jatropha curcas]
11 Hb_002239_020 0.1311202254 - - MLO, putative [Theobroma cacao]
12 Hb_000397_090 0.1346340901 - - PREDICTED: uncharacterized protein LOC105641235 [Jatropha curcas]
13 Hb_000331_710 0.134736752 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
14 Hb_000705_130 0.136819199 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006911_060 0.1375473565 - - hypothetical protein CISIN_1g000594mg [Citrus sinensis]
16 Hb_000625_040 0.1377982086 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
17 Hb_002097_210 0.1385553753 - - conserved hypothetical protein [Ricinus communis]
18 Hb_010921_060 0.1385840797 - - ATP binding protein, putative [Ricinus communis]
19 Hb_009786_010 0.1388094866 - - Phosphoprotein phosphatase [Theobroma cacao]
20 Hb_009247_030 0.1399102881 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]

Gene co-expression network

sample Hb_006052_040 Hb_006052_040 Hb_006198_060 Hb_006198_060 Hb_006052_040--Hb_006198_060 Hb_004122_020 Hb_004122_020 Hb_006052_040--Hb_004122_020 Hb_002475_010 Hb_002475_010 Hb_006052_040--Hb_002475_010 Hb_003376_150 Hb_003376_150 Hb_006052_040--Hb_003376_150 Hb_004712_140 Hb_004712_140 Hb_006052_040--Hb_004712_140 Hb_041290_030 Hb_041290_030 Hb_006052_040--Hb_041290_030 Hb_006198_060--Hb_004122_020 Hb_006198_060--Hb_041290_030 Hb_000123_310 Hb_000123_310 Hb_006198_060--Hb_000123_310 Hb_000338_030 Hb_000338_030 Hb_006198_060--Hb_000338_030 Hb_000579_220 Hb_000579_220 Hb_006198_060--Hb_000579_220 Hb_002968_010 Hb_002968_010 Hb_004122_020--Hb_002968_010 Hb_000656_370 Hb_000656_370 Hb_004122_020--Hb_000656_370 Hb_004122_020--Hb_002475_010 Hb_000000_070 Hb_000000_070 Hb_004122_020--Hb_000000_070 Hb_145139_010 Hb_145139_010 Hb_002475_010--Hb_145139_010 Hb_002475_010--Hb_002968_010 Hb_002097_210 Hb_002097_210 Hb_002475_010--Hb_002097_210 Hb_002475_010--Hb_000656_370 Hb_000398_200 Hb_000398_200 Hb_003376_150--Hb_000398_200 Hb_000625_040 Hb_000625_040 Hb_003376_150--Hb_000625_040 Hb_009786_010 Hb_009786_010 Hb_003376_150--Hb_009786_010 Hb_166155_010 Hb_166155_010 Hb_003376_150--Hb_166155_010 Hb_005048_080 Hb_005048_080 Hb_003376_150--Hb_005048_080 Hb_004712_140--Hb_041290_030 Hb_010327_010 Hb_010327_010 Hb_004712_140--Hb_010327_010 Hb_000331_710 Hb_000331_710 Hb_004712_140--Hb_000331_710 Hb_021596_070 Hb_021596_070 Hb_004712_140--Hb_021596_070 Hb_004712_140--Hb_000398_200 Hb_001677_130 Hb_001677_130 Hb_004712_140--Hb_001677_130 Hb_041290_030--Hb_000123_310 Hb_010962_030 Hb_010962_030 Hb_041290_030--Hb_010962_030 Hb_000146_110 Hb_000146_110 Hb_041290_030--Hb_000146_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.298423 149.054 13.8272 29.9182 1.55731 0.877032
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.045643 0.107739 0 22.034 23.8627

CAGE analysis