Hb_001677_130

Information

Type -
Description -
Location Contig1677: 85089-86213
Sequence    

Annotation

kegg
ID pop:POPTR_0081s002101
description hypothetical protein
nr
ID XP_006388888.1
description hypothetical protein POPTR_0081s002101g, partial [Populus trichocarpa]
swissprot
ID O82318
description Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=2 SV=1
trembl
ID U7E090
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0081s002101g PE=4 SV=1
Gene Ontology
ID GO:0016740
description receptor-like protein 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001677_130 0.0 - - hypothetical protein POPTR_0081s002101g, partial [Populus trichocarpa]
2 Hb_000398_200 0.0537477088 - - PREDICTED: uncharacterized protein LOC105631579 [Jatropha curcas]
3 Hb_000117_110 0.0752129866 - - transferase, putative [Ricinus communis]
4 Hb_007328_010 0.1021464035 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
5 Hb_004712_140 0.1085355451 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
6 Hb_091913_010 0.1127343823 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
7 Hb_010327_010 0.1233049308 - - calcium ion binding protein, putative [Ricinus communis]
8 Hb_002218_060 0.129017684 - - conserved hypothetical protein [Ricinus communis]
9 Hb_030370_070 0.1314765248 - - ATP binding protein, putative [Ricinus communis]
10 Hb_141990_050 0.1389696001 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
11 Hb_000331_710 0.1389881447 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
12 Hb_009189_010 0.139390337 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
13 Hb_039650_030 0.1409658721 - - hypothetical protein RCOM_2128750 [Ricinus communis]
14 Hb_005545_080 0.1435262091 - - hypothetical protein JCGZ_01293 [Jatropha curcas]
15 Hb_008897_020 0.1465885336 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Musa acuminata subsp. malaccensis]
16 Hb_003376_150 0.1478897035 - - PREDICTED: peroxidase 21 [Jatropha curcas]
17 Hb_041290_030 0.1479159182 - - PREDICTED: uncharacterized protein LOC105640874 [Jatropha curcas]
18 Hb_008550_030 0.1488815745 - - PREDICTED: tonoplast dicarboxylate transporter [Jatropha curcas]
19 Hb_000029_180 0.1506670868 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
20 Hb_000247_150 0.1537364812 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_001677_130 Hb_001677_130 Hb_000398_200 Hb_000398_200 Hb_001677_130--Hb_000398_200 Hb_000117_110 Hb_000117_110 Hb_001677_130--Hb_000117_110 Hb_007328_010 Hb_007328_010 Hb_001677_130--Hb_007328_010 Hb_004712_140 Hb_004712_140 Hb_001677_130--Hb_004712_140 Hb_091913_010 Hb_091913_010 Hb_001677_130--Hb_091913_010 Hb_010327_010 Hb_010327_010 Hb_001677_130--Hb_010327_010 Hb_000398_200--Hb_000117_110 Hb_000398_200--Hb_004712_140 Hb_003376_150 Hb_003376_150 Hb_000398_200--Hb_003376_150 Hb_000398_200--Hb_007328_010 Hb_011925_010 Hb_011925_010 Hb_000398_200--Hb_011925_010 Hb_000117_110--Hb_004712_140 Hb_000117_110--Hb_010327_010 Hb_002218_060 Hb_002218_060 Hb_000117_110--Hb_002218_060 Hb_000117_110--Hb_091913_010 Hb_141990_050 Hb_141990_050 Hb_007328_010--Hb_141990_050 Hb_009189_010 Hb_009189_010 Hb_007328_010--Hb_009189_010 Hb_000522_120 Hb_000522_120 Hb_007328_010--Hb_000522_120 Hb_002849_030 Hb_002849_030 Hb_007328_010--Hb_002849_030 Hb_073870_020 Hb_073870_020 Hb_007328_010--Hb_073870_020 Hb_041290_030 Hb_041290_030 Hb_004712_140--Hb_041290_030 Hb_004712_140--Hb_010327_010 Hb_000331_710 Hb_000331_710 Hb_004712_140--Hb_000331_710 Hb_021596_070 Hb_021596_070 Hb_004712_140--Hb_021596_070 Hb_008897_020 Hb_008897_020 Hb_091913_010--Hb_008897_020 Hb_091913_010--Hb_007328_010 Hb_045414_010 Hb_045414_010 Hb_091913_010--Hb_045414_010 Hb_039650_030 Hb_039650_030 Hb_091913_010--Hb_039650_030 Hb_007371_020 Hb_007371_020 Hb_010327_010--Hb_007371_020 Hb_108055_010 Hb_108055_010 Hb_010327_010--Hb_108055_010 Hb_000003_620 Hb_000003_620 Hb_010327_010--Hb_000003_620 Hb_000146_110 Hb_000146_110 Hb_010327_010--Hb_000146_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.70516 0.246913 0.26954 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.110673 0.355563

CAGE analysis