Hb_002218_060

Information

Type -
Description -
Location Contig2218: 86462-86767
Sequence    

Annotation

kegg
ID rcu:RCOM_0607800
description hypothetical protein
nr
ID XP_002521949.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S7I0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0607800 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002218_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000029_180 0.1100339798 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
3 Hb_000117_110 0.1232757634 - - transferase, putative [Ricinus communis]
4 Hb_001677_130 0.129017684 - - hypothetical protein POPTR_0081s002101g, partial [Populus trichocarpa]
5 Hb_003867_030 0.1357697941 - - -
6 Hb_000398_200 0.1362350775 - - PREDICTED: uncharacterized protein LOC105631579 [Jatropha curcas]
7 Hb_030370_070 0.1429734392 - - ATP binding protein, putative [Ricinus communis]
8 Hb_091913_010 0.1479725495 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
9 Hb_003376_150 0.1548673979 - - PREDICTED: peroxidase 21 [Jatropha curcas]
10 Hb_000286_180 0.1608944657 - - PREDICTED: dnaJ homolog subfamily B member 4 [Jatropha curcas]
11 Hb_005048_080 0.1624053473 - - PREDICTED: PAP-specific phosphatase HAL2-like [Jatropha curcas]
12 Hb_010327_010 0.1660472119 - - calcium ion binding protein, putative [Ricinus communis]
13 Hb_006717_020 0.1685224839 - - calcium-dependent protein kinase [Hevea brasiliensis]
14 Hb_000119_050 0.1713105473 - - PREDICTED: transmembrane protein 45B-like [Jatropha curcas]
15 Hb_000465_380 0.1817786291 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
16 Hb_030873_010 0.1851052444 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 isoform X2 [Cucumis sativus]
17 Hb_000392_510 0.1873862667 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Jatropha curcas]
18 Hb_005545_080 0.1876494491 - - hypothetical protein JCGZ_01293 [Jatropha curcas]
19 Hb_007590_040 0.1887357958 - - PREDICTED: vacuolar cation/proton exchanger 3-like [Jatropha curcas]
20 Hb_001031_020 0.1896458435 - - hypothetical protein VITISV_000631 [Vitis vinifera]

Gene co-expression network

sample Hb_002218_060 Hb_002218_060 Hb_000029_180 Hb_000029_180 Hb_002218_060--Hb_000029_180 Hb_000117_110 Hb_000117_110 Hb_002218_060--Hb_000117_110 Hb_001677_130 Hb_001677_130 Hb_002218_060--Hb_001677_130 Hb_003867_030 Hb_003867_030 Hb_002218_060--Hb_003867_030 Hb_000398_200 Hb_000398_200 Hb_002218_060--Hb_000398_200 Hb_030370_070 Hb_030370_070 Hb_002218_060--Hb_030370_070 Hb_000465_380 Hb_000465_380 Hb_000029_180--Hb_000465_380 Hb_000029_180--Hb_030370_070 Hb_108055_010 Hb_108055_010 Hb_000029_180--Hb_108055_010 Hb_010327_010 Hb_010327_010 Hb_000029_180--Hb_010327_010 Hb_129399_010 Hb_129399_010 Hb_000029_180--Hb_129399_010 Hb_000117_110--Hb_000398_200 Hb_000117_110--Hb_001677_130 Hb_004712_140 Hb_004712_140 Hb_000117_110--Hb_004712_140 Hb_000117_110--Hb_010327_010 Hb_091913_010 Hb_091913_010 Hb_000117_110--Hb_091913_010 Hb_001677_130--Hb_000398_200 Hb_007328_010 Hb_007328_010 Hb_001677_130--Hb_007328_010 Hb_001677_130--Hb_004712_140 Hb_001677_130--Hb_091913_010 Hb_001677_130--Hb_010327_010 Hb_002890_350 Hb_002890_350 Hb_003867_030--Hb_002890_350 Hb_003867_030--Hb_091913_010 Hb_006873_030 Hb_006873_030 Hb_003867_030--Hb_006873_030 Hb_006717_020 Hb_006717_020 Hb_003867_030--Hb_006717_020 Hb_010091_040 Hb_010091_040 Hb_003867_030--Hb_010091_040 Hb_000398_200--Hb_004712_140 Hb_003376_150 Hb_003376_150 Hb_000398_200--Hb_003376_150 Hb_000398_200--Hb_007328_010 Hb_011925_010 Hb_011925_010 Hb_000398_200--Hb_011925_010 Hb_001534_150 Hb_001534_150 Hb_030370_070--Hb_001534_150 Hb_030370_070--Hb_000465_380 Hb_008550_030 Hb_008550_030 Hb_030370_070--Hb_008550_030 Hb_001989_080 Hb_001989_080 Hb_030370_070--Hb_001989_080 Hb_107552_020 Hb_107552_020 Hb_030370_070--Hb_107552_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 7.1459 0.260729 0.516688 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.259565 1.7521

CAGE analysis