Hb_001989_080

Information

Type -
Description -
Location Contig1989: 133791-135821
Sequence    

Annotation

kegg
ID rcu:RCOM_1536830
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_002519607.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9FHG4
description Probable L-type lectin-domain containing receptor kinase S.7 OS=Arabidopsis thaliana GN=LECRKS7 PE=2 SV=1
trembl
ID B9S0T8
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1536830 PE=4 SV=1
Gene Ontology
ID GO:0004672
description l-type lectin-domain containing receptor kinase -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19958: 133679-134617
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001989_080 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_027474_010 0.0887133456 - - PREDICTED: uncharacterized protein LOC105629982 [Jatropha curcas]
3 Hb_004143_140 0.0901605203 - - glycosyltransferase, partial [Arabidopsis thaliana]
4 Hb_000044_050 0.1106991514 - - PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
5 Hb_001046_040 0.1189714074 - - UDP-glucosyltransferase, putative [Ricinus communis]
6 Hb_030370_070 0.1207281142 - - ATP binding protein, putative [Ricinus communis]
7 Hb_044624_010 0.1249725413 - - -
8 Hb_175670_010 0.1302402219 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
9 Hb_002871_170 0.1303409803 transcription factor TF Family: NAC NAC domain-containing protein 21/22, putative [Ricinus communis]
10 Hb_002097_210 0.1318182494 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001534_150 0.1382830359 - - PREDICTED: uncharacterized permease C29B12.14c [Jatropha curcas]
12 Hb_105814_020 0.1493535139 - - berberine bridge enzyme [Hevea brasiliensis]
13 Hb_000313_100 0.1499137677 rubber biosynthesis Gene Name: CPT4 PREDICTED: rubber cis-polyprenyltransferase HRT2 [Jatropha curcas]
14 Hb_009247_030 0.1502666336 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
15 Hb_002239_020 0.1556622721 - - MLO, putative [Theobroma cacao]
16 Hb_000041_160 0.1561903443 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
17 Hb_000002_090 0.1565264827 - - PREDICTED: RING-H2 finger protein ATL8-like isoform X2 [Jatropha curcas]
18 Hb_004730_010 0.157052508 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT5 [Jatropha curcas]
19 Hb_010055_020 0.1583889692 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
20 Hb_008550_030 0.1589210636 - - PREDICTED: tonoplast dicarboxylate transporter [Jatropha curcas]

Gene co-expression network

sample Hb_001989_080 Hb_001989_080 Hb_027474_010 Hb_027474_010 Hb_001989_080--Hb_027474_010 Hb_004143_140 Hb_004143_140 Hb_001989_080--Hb_004143_140 Hb_000044_050 Hb_000044_050 Hb_001989_080--Hb_000044_050 Hb_001046_040 Hb_001046_040 Hb_001989_080--Hb_001046_040 Hb_030370_070 Hb_030370_070 Hb_001989_080--Hb_030370_070 Hb_044624_010 Hb_044624_010 Hb_001989_080--Hb_044624_010 Hb_002097_210 Hb_002097_210 Hb_027474_010--Hb_002097_210 Hb_123078_010 Hb_123078_010 Hb_027474_010--Hb_123078_010 Hb_000041_160 Hb_000041_160 Hb_027474_010--Hb_000041_160 Hb_105814_020 Hb_105814_020 Hb_027474_010--Hb_105814_020 Hb_027474_010--Hb_001046_040 Hb_175670_010 Hb_175670_010 Hb_004143_140--Hb_175670_010 Hb_004143_140--Hb_001046_040 Hb_004143_140--Hb_044624_010 Hb_004143_140--Hb_027474_010 Hb_005271_180 Hb_005271_180 Hb_004143_140--Hb_005271_180 Hb_026053_030 Hb_026053_030 Hb_000044_050--Hb_026053_030 Hb_008195_020 Hb_008195_020 Hb_000044_050--Hb_008195_020 Hb_004007_230 Hb_004007_230 Hb_000044_050--Hb_004007_230 Hb_000417_150 Hb_000417_150 Hb_000044_050--Hb_000417_150 Hb_000044_050--Hb_004143_140 Hb_001046_040--Hb_044624_010 Hb_000813_090 Hb_000813_090 Hb_001046_040--Hb_000813_090 Hb_115114_010 Hb_115114_010 Hb_001046_040--Hb_115114_010 Hb_004324_220 Hb_004324_220 Hb_001046_040--Hb_004324_220 Hb_001046_040--Hb_175670_010 Hb_000029_180 Hb_000029_180 Hb_030370_070--Hb_000029_180 Hb_001534_150 Hb_001534_150 Hb_030370_070--Hb_001534_150 Hb_000465_380 Hb_000465_380 Hb_030370_070--Hb_000465_380 Hb_008550_030 Hb_008550_030 Hb_030370_070--Hb_008550_030 Hb_107552_020 Hb_107552_020 Hb_030370_070--Hb_107552_020 Hb_044624_010--Hb_004324_220 Hb_022487_010 Hb_022487_010 Hb_044624_010--Hb_022487_010 Hb_044624_010--Hb_175670_010 Hb_044624_010--Hb_115114_010 Hb_044624_010--Hb_000813_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0195269 54.8792 6.61574 15.6483 0 0.00854359
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0443737 0 0 6.00682 29.0115

CAGE analysis