Hb_000044_050

Information

Type -
Description -
Location Contig44: 86651-90509
Sequence    

Annotation

kegg
ID rcu:RCOM_1584750
description amino acid transporter, putative
nr
ID XP_012068117.1
description PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
swissprot
ID P92934
description Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1
trembl
ID A0A067KZB6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15958 PE=4 SV=1
Gene Ontology
ID GO:0016021
description amino acid permease 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42608: 86683-90217
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000044_050 0.0 - - PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
2 Hb_026053_030 0.0935857402 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
3 Hb_008195_020 0.0963169181 - - Vacuolar-processing enzyme precursor [Ricinus communis]
4 Hb_001989_080 0.1106991514 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_004007_230 0.1137156139 - - PREDICTED: putative formamidase C869.04 isoform X1 [Jatropha curcas]
6 Hb_000417_150 0.1224682292 - - hypothetical protein JCGZ_21586 [Jatropha curcas]
7 Hb_004143_140 0.1265254239 - - glycosyltransferase, partial [Arabidopsis thaliana]
8 Hb_011344_140 0.1289555051 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
9 Hb_002045_220 0.1331992385 - - PREDICTED: uncharacterized protein LOC105649919 isoform X1 [Jatropha curcas]
10 Hb_000465_380 0.1355093941 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
11 Hb_009247_030 0.148647105 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
12 Hb_002871_170 0.1501856875 transcription factor TF Family: NAC NAC domain-containing protein 21/22, putative [Ricinus communis]
13 Hb_002239_020 0.1507369263 - - MLO, putative [Theobroma cacao]
14 Hb_001907_020 0.1522139154 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
15 Hb_030370_070 0.1535908972 - - ATP binding protein, putative [Ricinus communis]
16 Hb_000029_180 0.1556183498 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
17 Hb_056506_010 0.1615888245 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
18 Hb_172426_010 0.1624785795 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
19 Hb_000236_430 0.1643026192 - - PREDICTED: uncharacterized protein LOC105633302 [Jatropha curcas]
20 Hb_027474_010 0.1664118144 - - PREDICTED: uncharacterized protein LOC105629982 [Jatropha curcas]

Gene co-expression network

sample Hb_000044_050 Hb_000044_050 Hb_026053_030 Hb_026053_030 Hb_000044_050--Hb_026053_030 Hb_008195_020 Hb_008195_020 Hb_000044_050--Hb_008195_020 Hb_001989_080 Hb_001989_080 Hb_000044_050--Hb_001989_080 Hb_004007_230 Hb_004007_230 Hb_000044_050--Hb_004007_230 Hb_000417_150 Hb_000417_150 Hb_000044_050--Hb_000417_150 Hb_004143_140 Hb_004143_140 Hb_000044_050--Hb_004143_140 Hb_026053_030--Hb_000417_150 Hb_026053_030--Hb_004007_230 Hb_031949_010 Hb_031949_010 Hb_026053_030--Hb_031949_010 Hb_011344_140 Hb_011344_140 Hb_026053_030--Hb_011344_140 Hb_001907_020 Hb_001907_020 Hb_026053_030--Hb_001907_020 Hb_008195_020--Hb_026053_030 Hb_008195_020--Hb_001907_020 Hb_008195_020--Hb_011344_140 Hb_008195_020--Hb_000417_150 Hb_000236_430 Hb_000236_430 Hb_008195_020--Hb_000236_430 Hb_027474_010 Hb_027474_010 Hb_001989_080--Hb_027474_010 Hb_001989_080--Hb_004143_140 Hb_001046_040 Hb_001046_040 Hb_001989_080--Hb_001046_040 Hb_030370_070 Hb_030370_070 Hb_001989_080--Hb_030370_070 Hb_044624_010 Hb_044624_010 Hb_001989_080--Hb_044624_010 Hb_001357_360 Hb_001357_360 Hb_004007_230--Hb_001357_360 Hb_004007_230--Hb_004143_140 Hb_003077_140 Hb_003077_140 Hb_004007_230--Hb_003077_140 Hb_000767_010 Hb_000767_010 Hb_004007_230--Hb_000767_010 Hb_028872_100 Hb_028872_100 Hb_000417_150--Hb_028872_100 Hb_000417_150--Hb_004007_230 Hb_000417_150--Hb_031949_010 Hb_001411_100 Hb_001411_100 Hb_000417_150--Hb_001411_100 Hb_175670_010 Hb_175670_010 Hb_004143_140--Hb_175670_010 Hb_004143_140--Hb_001046_040 Hb_004143_140--Hb_044624_010 Hb_004143_140--Hb_027474_010 Hb_005271_180 Hb_005271_180 Hb_004143_140--Hb_005271_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0224603 47.263 4.27799 9.2334 0.042792 0.0415737
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0510872 0 0.0379896 10.8304 28.4003

CAGE analysis