Hb_028872_100

Information

Type -
Description -
Location Contig28872: 67361-67980
Sequence    

Annotation

kegg
ID obr:102707106
description uncharacterized LOC102707106
nr
ID XP_006651032.1
description PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
swissprot
ID -
description -
trembl
ID I1QID9
description Uncharacterized protein (Fragment) OS=Oryza glaberrima PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028872_100 0.0 - - PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
2 Hb_000685_140 0.0807673535 - - PREDICTED: uncharacterized protein LOC105645669 [Jatropha curcas]
3 Hb_001411_100 0.1098910539 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
4 Hb_000767_010 0.1102980052 - - PREDICTED: geraniol 8-hydroxylase-like isoform X2 [Solanum lycopersicum]
5 Hb_000417_150 0.1111233654 - - hypothetical protein JCGZ_21586 [Jatropha curcas]
6 Hb_000101_320 0.1160669059 - - -
7 Hb_005306_020 0.1171848423 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
8 Hb_001452_090 0.1246223812 - - PREDICTED: serine carboxypeptidase II-3-like [Vitis vinifera]
9 Hb_000009_390 0.1259566022 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]
10 Hb_001357_360 0.1319140705 - - zinc finger protein, putative [Ricinus communis]
11 Hb_005470_040 0.13307762 - - hypothetical protein POPTR_0015s09760g [Populus trichocarpa]
12 Hb_031949_010 0.1372506749 - - -
13 Hb_067345_020 0.1426743015 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
14 Hb_038833_010 0.1440545268 - - polyprotein [Ananas comosus]
15 Hb_002818_070 0.1452490652 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
16 Hb_026144_030 0.1473235256 - - PREDICTED: high affinity nitrate transporter 2.5 [Jatropha curcas]
17 Hb_008111_010 0.1474667158 - - hypothetical protein VITISV_021527 [Vitis vinifera]
18 Hb_004994_200 0.1498263444 - - PREDICTED: uncharacterized protein LOC105174340 [Sesamum indicum]
19 Hb_026053_030 0.1523610821 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
20 Hb_158534_010 0.1533669145 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]

Gene co-expression network

sample Hb_028872_100 Hb_028872_100 Hb_000685_140 Hb_000685_140 Hb_028872_100--Hb_000685_140 Hb_001411_100 Hb_001411_100 Hb_028872_100--Hb_001411_100 Hb_000767_010 Hb_000767_010 Hb_028872_100--Hb_000767_010 Hb_000417_150 Hb_000417_150 Hb_028872_100--Hb_000417_150 Hb_000101_320 Hb_000101_320 Hb_028872_100--Hb_000101_320 Hb_005306_020 Hb_005306_020 Hb_028872_100--Hb_005306_020 Hb_000685_140--Hb_000101_320 Hb_000685_140--Hb_001411_100 Hb_001452_090 Hb_001452_090 Hb_000685_140--Hb_001452_090 Hb_000600_080 Hb_000600_080 Hb_000685_140--Hb_000600_080 Hb_008834_010 Hb_008834_010 Hb_000685_140--Hb_008834_010 Hb_001411_100--Hb_000600_080 Hb_001411_100--Hb_000101_320 Hb_001411_100--Hb_001452_090 Hb_001411_100--Hb_000417_150 Hb_003077_140 Hb_003077_140 Hb_000767_010--Hb_003077_140 Hb_026144_030 Hb_026144_030 Hb_000767_010--Hb_026144_030 Hb_001357_360 Hb_001357_360 Hb_000767_010--Hb_001357_360 Hb_008111_010 Hb_008111_010 Hb_000767_010--Hb_008111_010 Hb_004007_230 Hb_004007_230 Hb_000767_010--Hb_004007_230 Hb_026053_030 Hb_026053_030 Hb_000417_150--Hb_026053_030 Hb_000417_150--Hb_004007_230 Hb_031949_010 Hb_031949_010 Hb_000417_150--Hb_031949_010 Hb_000044_050 Hb_000044_050 Hb_000417_150--Hb_000044_050 Hb_000101_320--Hb_001452_090 Hb_000101_320--Hb_008834_010 Hb_000009_390 Hb_000009_390 Hb_000101_320--Hb_000009_390 Hb_005306_020--Hb_008111_010 Hb_001971_020 Hb_001971_020 Hb_005306_020--Hb_001971_020 Hb_005306_020--Hb_001357_360 Hb_000264_340 Hb_000264_340 Hb_005306_020--Hb_000264_340 Hb_005306_020--Hb_000767_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.183047 0.0328625 0.0888025 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.129179 0.305131

CAGE analysis