Hb_000264_340

Information

Type -
Description -
Location Contig264: 311827-318888
Sequence    

Annotation

kegg
ID pop:POPTR_0011s05210g
description hypothetical protein
nr
ID XP_012091601.1
description PREDICTED: callose synthase 11-like isoform X1 [Jatropha curcas]
swissprot
ID Q9S9U0
description Callose synthase 11 OS=Arabidopsis thaliana GN=CALS11 PE=2 SV=1
trembl
ID B9I122
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s05210g PE=4 SV=2
Gene Ontology
ID GO:0000148
description callose synthase 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27631: 314250-318788
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000264_340 0.0 - - PREDICTED: callose synthase 11-like isoform X1 [Jatropha curcas]
2 Hb_003212_010 0.0811460845 - - sucrose transporter 4 [Hevea brasiliensis]
3 Hb_005470_040 0.098091289 - - hypothetical protein POPTR_0015s09760g [Populus trichocarpa]
4 Hb_109489_010 0.1076995283 - - multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
5 Hb_123560_050 0.1078858544 - - PREDICTED: probable receptor-like protein kinase At5g24010 [Jatropha curcas]
6 Hb_000597_080 0.1107491979 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
7 Hb_001971_020 0.1125639933 - - PREDICTED: alpha-dioxygenase 2 [Populus euphratica]
8 Hb_001357_360 0.1140777042 - - zinc finger protein, putative [Ricinus communis]
9 Hb_005306_020 0.1205010313 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
10 Hb_003767_010 0.1242362352 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
11 Hb_002420_010 0.1252180491 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
12 Hb_000377_160 0.1263539235 - - PREDICTED: oligopeptide transporter 3 [Jatropha curcas]
13 Hb_002308_060 0.1277302806 - - PREDICTED: cytochrome P450 704C1-like [Jatropha curcas]
14 Hb_008111_010 0.1288591956 - - hypothetical protein VITISV_021527 [Vitis vinifera]
15 Hb_000059_080 0.1291116499 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
16 Hb_001819_010 0.1309837658 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
17 Hb_029866_110 0.1346873239 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 10-like [Jatropha curcas]
18 Hb_001085_230 0.1351846647 - - PREDICTED: receptor like protein kinase S.2 [Jatropha curcas]
19 Hb_026144_030 0.1352188448 - - PREDICTED: high affinity nitrate transporter 2.5 [Jatropha curcas]
20 Hb_002217_200 0.1372702637 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000264_340 Hb_000264_340 Hb_003212_010 Hb_003212_010 Hb_000264_340--Hb_003212_010 Hb_005470_040 Hb_005470_040 Hb_000264_340--Hb_005470_040 Hb_109489_010 Hb_109489_010 Hb_000264_340--Hb_109489_010 Hb_123560_050 Hb_123560_050 Hb_000264_340--Hb_123560_050 Hb_000597_080 Hb_000597_080 Hb_000264_340--Hb_000597_080 Hb_001971_020 Hb_001971_020 Hb_000264_340--Hb_001971_020 Hb_000059_080 Hb_000059_080 Hb_003212_010--Hb_000059_080 Hb_003767_010 Hb_003767_010 Hb_003212_010--Hb_003767_010 Hb_003212_010--Hb_000597_080 Hb_003212_010--Hb_109489_010 Hb_003212_010--Hb_005470_040 Hb_031949_010 Hb_031949_010 Hb_005470_040--Hb_031949_010 Hb_001357_360 Hb_001357_360 Hb_005470_040--Hb_001357_360 Hb_000377_160 Hb_000377_160 Hb_005470_040--Hb_000377_160 Hb_005470_040--Hb_109489_010 Hb_005470_040--Hb_123560_050 Hb_109489_010--Hb_003767_010 Hb_109489_010--Hb_123560_050 Hb_029866_110 Hb_029866_110 Hb_109489_010--Hb_029866_110 Hb_000808_220 Hb_000808_220 Hb_109489_010--Hb_000808_220 Hb_001819_010 Hb_001819_010 Hb_123560_050--Hb_001819_010 Hb_123560_050--Hb_000377_160 Hb_003077_140 Hb_003077_140 Hb_123560_050--Hb_003077_140 Hb_123560_050--Hb_029866_110 Hb_007420_020 Hb_007420_020 Hb_123560_050--Hb_007420_020 Hb_026144_030 Hb_026144_030 Hb_123560_050--Hb_026144_030 Hb_000917_120 Hb_000917_120 Hb_000597_080--Hb_000917_120 Hb_001607_070 Hb_001607_070 Hb_000597_080--Hb_001607_070 Hb_009659_040 Hb_009659_040 Hb_000597_080--Hb_009659_040 Hb_008111_010 Hb_008111_010 Hb_000597_080--Hb_008111_010 Hb_006120_030 Hb_006120_030 Hb_000597_080--Hb_006120_030 Hb_001971_020--Hb_001357_360 Hb_000563_120 Hb_000563_120 Hb_001971_020--Hb_000563_120 Hb_001971_020--Hb_008111_010 Hb_005306_020 Hb_005306_020 Hb_001971_020--Hb_005306_020 Hb_007320_020 Hb_007320_020 Hb_001971_020--Hb_007320_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.301058 12.8547 3.01456 7.20308 0.110839 0.129534
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0155333 0.0855736 0.353364 13.8439 14.5402

CAGE analysis