Hb_005470_040

Information

Type -
Description -
Location Contig5470: 48059-67749
Sequence    

Annotation

kegg
ID pop:POPTR_0015s09760g
description POPTRDRAFT_575255; hypothetical protein
nr
ID XP_002321645.1
description hypothetical protein POPTR_0015s09760g [Populus trichocarpa]
swissprot
ID P24465
description Cytochrome P450 71A1 OS=Persea americana GN=CYP71A1 PE=1 SV=2
trembl
ID B9IF09
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s09760g PE=3 SV=1
Gene Ontology
ID GO:0004497
description cytochrome p450 71a1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48020: 49160-49434 , PASA_asmbl_48021: 65877-67640
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005470_040 0.0 - - hypothetical protein POPTR_0015s09760g [Populus trichocarpa]
2 Hb_031949_010 0.0923682436 - - -
3 Hb_000264_340 0.098091289 - - PREDICTED: callose synthase 11-like isoform X1 [Jatropha curcas]
4 Hb_001357_360 0.100470394 - - zinc finger protein, putative [Ricinus communis]
5 Hb_000377_160 0.1007377475 - - PREDICTED: oligopeptide transporter 3 [Jatropha curcas]
6 Hb_109489_010 0.1060199623 - - multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
7 Hb_123560_050 0.113878776 - - PREDICTED: probable receptor-like protein kinase At5g24010 [Jatropha curcas]
8 Hb_048476_070 0.1170546866 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003767_010 0.1180236902 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
10 Hb_001971_020 0.1299906256 - - PREDICTED: alpha-dioxygenase 2 [Populus euphratica]
11 Hb_000009_390 0.1314389687 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]
12 Hb_003212_010 0.1324659071 - - sucrose transporter 4 [Hevea brasiliensis]
13 Hb_028872_100 0.13307762 - - PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
14 Hb_005306_020 0.1345515532 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
15 Hb_000191_100 0.134561311 - - cytochrome P450, putative [Ricinus communis]
16 Hb_000059_080 0.1355030594 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
17 Hb_003077_140 0.1358252128 - - hypothetical protein JCGZ_16294 [Jatropha curcas]
18 Hb_000685_140 0.1385025907 - - PREDICTED: uncharacterized protein LOC105645669 [Jatropha curcas]
19 Hb_000417_150 0.1385192059 - - hypothetical protein JCGZ_21586 [Jatropha curcas]
20 Hb_000767_010 0.1390406091 - - PREDICTED: geraniol 8-hydroxylase-like isoform X2 [Solanum lycopersicum]

Gene co-expression network

sample Hb_005470_040 Hb_005470_040 Hb_031949_010 Hb_031949_010 Hb_005470_040--Hb_031949_010 Hb_000264_340 Hb_000264_340 Hb_005470_040--Hb_000264_340 Hb_001357_360 Hb_001357_360 Hb_005470_040--Hb_001357_360 Hb_000377_160 Hb_000377_160 Hb_005470_040--Hb_000377_160 Hb_109489_010 Hb_109489_010 Hb_005470_040--Hb_109489_010 Hb_123560_050 Hb_123560_050 Hb_005470_040--Hb_123560_050 Hb_031949_010--Hb_000377_160 Hb_001856_110 Hb_001856_110 Hb_031949_010--Hb_001856_110 Hb_000009_390 Hb_000009_390 Hb_031949_010--Hb_000009_390 Hb_026053_030 Hb_026053_030 Hb_031949_010--Hb_026053_030 Hb_000417_150 Hb_000417_150 Hb_031949_010--Hb_000417_150 Hb_003212_010 Hb_003212_010 Hb_000264_340--Hb_003212_010 Hb_000264_340--Hb_109489_010 Hb_000264_340--Hb_123560_050 Hb_000597_080 Hb_000597_080 Hb_000264_340--Hb_000597_080 Hb_001971_020 Hb_001971_020 Hb_000264_340--Hb_001971_020 Hb_001357_360--Hb_001971_020 Hb_003077_140 Hb_003077_140 Hb_001357_360--Hb_003077_140 Hb_000767_010 Hb_000767_010 Hb_001357_360--Hb_000767_010 Hb_001357_360--Hb_123560_050 Hb_004007_230 Hb_004007_230 Hb_001357_360--Hb_004007_230 Hb_000649_280 Hb_000649_280 Hb_000377_160--Hb_000649_280 Hb_003767_010 Hb_003767_010 Hb_000377_160--Hb_003767_010 Hb_000377_160--Hb_123560_050 Hb_000563_120 Hb_000563_120 Hb_000377_160--Hb_000563_120 Hb_109489_010--Hb_003767_010 Hb_109489_010--Hb_123560_050 Hb_029866_110 Hb_029866_110 Hb_109489_010--Hb_029866_110 Hb_000808_220 Hb_000808_220 Hb_109489_010--Hb_000808_220 Hb_001819_010 Hb_001819_010 Hb_123560_050--Hb_001819_010 Hb_123560_050--Hb_003077_140 Hb_123560_050--Hb_029866_110 Hb_007420_020 Hb_007420_020 Hb_123560_050--Hb_007420_020 Hb_026144_030 Hb_026144_030 Hb_123560_050--Hb_026144_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.701354 33.3569 7.85752 9.758 0.0196175 0.126716
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0564353 0.0799425 0.477432 27.5728 38.6576

CAGE analysis