Hb_109489_010

Information

Type -
Description -
Location Contig109489: 2055-4202
Sequence    

Annotation

kegg
ID rcu:RCOM_1082070
description multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative (EC:1.3.1.74)
nr
ID XP_002515003.1
description multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
swissprot
ID Q7GB25
description ABC transporter C family member 5 OS=Arabidopsis thaliana GN=ABCC5 PE=2 SV=2
trembl
ID B9RMN4
description Multidrug resistance-associated protein 2, 6 (Mrp2, 6), abc-transoprter, putative OS=Ricinus communis GN=RCOM_1082070 PE=3 SV=1
Gene Ontology
ID GO:0000166
description abc transporter c family member 15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_109489_010 0.0 - - multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
2 Hb_003767_010 0.1026227397 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
3 Hb_005470_040 0.1060199623 - - hypothetical protein POPTR_0015s09760g [Populus trichocarpa]
4 Hb_000264_340 0.1076995283 - - PREDICTED: callose synthase 11-like isoform X1 [Jatropha curcas]
5 Hb_123560_050 0.109917725 - - PREDICTED: probable receptor-like protein kinase At5g24010 [Jatropha curcas]
6 Hb_029866_110 0.1185488397 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 10-like [Jatropha curcas]
7 Hb_000808_220 0.118895674 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump 1-like [Jatropha curcas]
8 Hb_000377_160 0.1199150964 - - PREDICTED: oligopeptide transporter 3 [Jatropha curcas]
9 Hb_002217_200 0.1228350553 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
10 Hb_031949_010 0.1232536699 - - -
11 Hb_000597_080 0.1254536457 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
12 Hb_003212_010 0.1289538383 - - sucrose transporter 4 [Hevea brasiliensis]
13 Hb_001085_230 0.1342983834 - - PREDICTED: receptor like protein kinase S.2 [Jatropha curcas]
14 Hb_000059_080 0.1355669419 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
15 Hb_000649_280 0.1409737911 - - PREDICTED: F-box protein PP2-B10-like [Pyrus x bretschneideri]
16 Hb_005306_020 0.1418374398 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
17 Hb_001819_010 0.1427737556 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
18 Hb_001357_360 0.1439002938 - - zinc finger protein, putative [Ricinus communis]
19 Hb_001971_020 0.1506138756 - - PREDICTED: alpha-dioxygenase 2 [Populus euphratica]
20 Hb_000917_120 0.1516078225 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_109489_010 Hb_109489_010 Hb_003767_010 Hb_003767_010 Hb_109489_010--Hb_003767_010 Hb_005470_040 Hb_005470_040 Hb_109489_010--Hb_005470_040 Hb_000264_340 Hb_000264_340 Hb_109489_010--Hb_000264_340 Hb_123560_050 Hb_123560_050 Hb_109489_010--Hb_123560_050 Hb_029866_110 Hb_029866_110 Hb_109489_010--Hb_029866_110 Hb_000808_220 Hb_000808_220 Hb_109489_010--Hb_000808_220 Hb_000377_160 Hb_000377_160 Hb_003767_010--Hb_000377_160 Hb_000649_280 Hb_000649_280 Hb_003767_010--Hb_000649_280 Hb_003767_010--Hb_029866_110 Hb_002217_200 Hb_002217_200 Hb_003767_010--Hb_002217_200 Hb_003767_010--Hb_123560_050 Hb_031949_010 Hb_031949_010 Hb_005470_040--Hb_031949_010 Hb_005470_040--Hb_000264_340 Hb_001357_360 Hb_001357_360 Hb_005470_040--Hb_001357_360 Hb_005470_040--Hb_000377_160 Hb_005470_040--Hb_123560_050 Hb_003212_010 Hb_003212_010 Hb_000264_340--Hb_003212_010 Hb_000264_340--Hb_123560_050 Hb_000597_080 Hb_000597_080 Hb_000264_340--Hb_000597_080 Hb_001971_020 Hb_001971_020 Hb_000264_340--Hb_001971_020 Hb_001819_010 Hb_001819_010 Hb_123560_050--Hb_001819_010 Hb_123560_050--Hb_000377_160 Hb_003077_140 Hb_003077_140 Hb_123560_050--Hb_003077_140 Hb_123560_050--Hb_029866_110 Hb_007420_020 Hb_007420_020 Hb_123560_050--Hb_007420_020 Hb_026144_030 Hb_026144_030 Hb_123560_050--Hb_026144_030 Hb_170878_050 Hb_170878_050 Hb_029866_110--Hb_170878_050 Hb_001660_050 Hb_001660_050 Hb_029866_110--Hb_001660_050 Hb_016637_020 Hb_016637_020 Hb_029866_110--Hb_016637_020 Hb_009659_040 Hb_009659_040 Hb_029866_110--Hb_009659_040 Hb_029866_110--Hb_001819_010 Hb_001085_230 Hb_001085_230 Hb_000808_220--Hb_001085_230 Hb_001946_060 Hb_001946_060 Hb_000808_220--Hb_001946_060 Hb_001675_130 Hb_001675_130 Hb_000808_220--Hb_001675_130 Hb_007919_030 Hb_007919_030 Hb_000808_220--Hb_007919_030 Hb_000808_220--Hb_000377_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0390321 2.70572 0.660111 0.995569 0.104844 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.12682 3.21967

CAGE analysis