Hb_007919_030

Information

Type -
Description -
Location Contig7919: 18875-37300
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58365: 17502-36145 , PASA_asmbl_58366: 36023-37306 , PASA_asmbl_58367: 33793-34065
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007919_030 0.0 - - -
2 Hb_000163_250 0.0862271405 - - unnamed protein product [Vitis vinifera]
3 Hb_001675_130 0.1041126233 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein GLABRA 2 [Jatropha curcas]
4 Hb_001085_230 0.1081012491 - - PREDICTED: receptor like protein kinase S.2 [Jatropha curcas]
5 Hb_001946_060 0.1198158705 - - PREDICTED: TBC1 domain family member 13-like isoform X1 [Jatropha curcas]
6 Hb_002217_200 0.120390992 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
7 Hb_001819_010 0.1216149429 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
8 Hb_008783_020 0.1232358961 - - hypothetical protein JCGZ_21284 [Jatropha curcas]
9 Hb_107809_010 0.1252825662 - - JHL06P13.14 [Jatropha curcas]
10 Hb_000377_160 0.125806164 - - PREDICTED: oligopeptide transporter 3 [Jatropha curcas]
11 Hb_000037_010 0.1278863749 - - PREDICTED: cation/H(+) antiporter 18-like [Jatropha curcas]
12 Hb_003767_010 0.132130848 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
13 Hb_032717_010 0.1322036855 - - unnamed protein product [Vitis vinifera]
14 Hb_001634_080 0.1333985554 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
15 Hb_170878_050 0.1334826424 - - retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
16 Hb_006316_030 0.1360930164 - - aldehyde oxidase, putative [Ricinus communis]
17 Hb_005276_220 0.1366796247 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
18 Hb_000521_360 0.1379037325 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
19 Hb_000649_280 0.1382764527 - - PREDICTED: F-box protein PP2-B10-like [Pyrus x bretschneideri]
20 Hb_000108_090 0.1397172236 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]

Gene co-expression network

sample Hb_007919_030 Hb_007919_030 Hb_000163_250 Hb_000163_250 Hb_007919_030--Hb_000163_250 Hb_001675_130 Hb_001675_130 Hb_007919_030--Hb_001675_130 Hb_001085_230 Hb_001085_230 Hb_007919_030--Hb_001085_230 Hb_001946_060 Hb_001946_060 Hb_007919_030--Hb_001946_060 Hb_002217_200 Hb_002217_200 Hb_007919_030--Hb_002217_200 Hb_001819_010 Hb_001819_010 Hb_007919_030--Hb_001819_010 Hb_000008_080 Hb_000008_080 Hb_000163_250--Hb_000008_080 Hb_008783_020 Hb_008783_020 Hb_000163_250--Hb_008783_020 Hb_000037_010 Hb_000037_010 Hb_000163_250--Hb_000037_010 Hb_005276_220 Hb_005276_220 Hb_000163_250--Hb_005276_220 Hb_006788_100 Hb_006788_100 Hb_000163_250--Hb_006788_100 Hb_000254_150 Hb_000254_150 Hb_001675_130--Hb_000254_150 Hb_000684_010 Hb_000684_010 Hb_001675_130--Hb_000684_010 Hb_003767_010 Hb_003767_010 Hb_001675_130--Hb_003767_010 Hb_000649_280 Hb_000649_280 Hb_001675_130--Hb_000649_280 Hb_010813_030 Hb_010813_030 Hb_001675_130--Hb_010813_030 Hb_001085_230--Hb_000037_010 Hb_001085_230--Hb_001819_010 Hb_123560_050 Hb_123560_050 Hb_001085_230--Hb_123560_050 Hb_000563_120 Hb_000563_120 Hb_001085_230--Hb_000563_120 Hb_000377_160 Hb_000377_160 Hb_001085_230--Hb_000377_160 Hb_001946_060--Hb_000163_250 Hb_001946_060--Hb_001085_230 Hb_001946_060--Hb_000037_010 Hb_000808_220 Hb_000808_220 Hb_001946_060--Hb_000808_220 Hb_002518_270 Hb_002518_270 Hb_001946_060--Hb_002518_270 Hb_002217_200--Hb_003767_010 Hb_029866_110 Hb_029866_110 Hb_002217_200--Hb_029866_110 Hb_109489_010 Hb_109489_010 Hb_002217_200--Hb_109489_010 Hb_002217_200--Hb_001819_010 Hb_002217_200--Hb_000377_160 Hb_001819_010--Hb_123560_050 Hb_001819_010--Hb_006788_100 Hb_170878_050 Hb_170878_050 Hb_001819_010--Hb_170878_050 Hb_001819_010--Hb_029866_110 Hb_000191_100 Hb_000191_100 Hb_001819_010--Hb_000191_100 Hb_009659_040 Hb_009659_040 Hb_001819_010--Hb_009659_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0146014 2.99664 1.31163 0.664323 0.0349512 0.0398777
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.040884 0.0160873 0.0154589 3.29982 1.88023

CAGE analysis