Hb_000037_010

Information

Type -
Description -
Location Contig37: 7192-12977
Sequence    

Annotation

kegg
ID pop:POPTR_0003s13470g
description POPTRDRAFT_799985; hypothetical protein
nr
ID XP_012086787.1
description PREDICTED: cation/H(+) antiporter 18-like [Jatropha curcas]
swissprot
ID Q9FFR9
description Cation/H(+) antiporter 18 OS=Arabidopsis thaliana GN=CHX18 PE=2 SV=1
trembl
ID A0A067JMZ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20507 PE=4 SV=1
Gene Ontology
ID GO:0005770
description cation h(+) antiporter 18-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38015: 7259-7376 , PASA_asmbl_38016: 12543-12764
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000037_010 0.0 - - PREDICTED: cation/H(+) antiporter 18-like [Jatropha curcas]
2 Hb_001085_230 0.098427665 - - PREDICTED: receptor like protein kinase S.2 [Jatropha curcas]
3 Hb_009803_030 0.099662131 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
4 Hb_000163_250 0.1061848052 - - unnamed protein product [Vitis vinifera]
5 Hb_046101_010 0.1068811942 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Jatropha curcas]
6 Hb_114310_050 0.1103772237 - - Iron(III)-zinc(II) purple acid phosphatase precursor family protein [Populus trichocarpa]
7 Hb_023344_130 0.1122488897 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
8 Hb_007420_020 0.1127302384 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
9 Hb_007420_010 0.1128767448 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X2 [Jatropha curcas]
10 Hb_001369_070 0.1166812656 - - unnamed protein product [Vitis vinifera]
11 Hb_007894_030 0.1203876434 - - calcium-dependent protein kinase, putative [Ricinus communis]
12 Hb_004306_140 0.1223697934 - - calcineurin-like phosphoesterase [Manihot esculenta]
13 Hb_000563_120 0.1230892857 - - hypothetical protein JCGZ_18936 [Jatropha curcas]
14 Hb_002078_240 0.1241269678 rubber biosynthesis Gene Name: SRPP4 PREDICTED: REF/SRPP-like protein At1g67360 [Jatropha curcas]
15 Hb_001946_060 0.1249672377 - - PREDICTED: TBC1 domain family member 13-like isoform X1 [Jatropha curcas]
16 Hb_002600_010 0.1259370018 - - Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]
17 Hb_001819_010 0.1264831994 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
18 Hb_038777_010 0.1265293464 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN2 isoform X1 [Populus euphratica]
19 Hb_000501_040 0.127324156 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_006316_030 0.1276815017 - - aldehyde oxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000037_010 Hb_000037_010 Hb_001085_230 Hb_001085_230 Hb_000037_010--Hb_001085_230 Hb_009803_030 Hb_009803_030 Hb_000037_010--Hb_009803_030 Hb_000163_250 Hb_000163_250 Hb_000037_010--Hb_000163_250 Hb_046101_010 Hb_046101_010 Hb_000037_010--Hb_046101_010 Hb_114310_050 Hb_114310_050 Hb_000037_010--Hb_114310_050 Hb_023344_130 Hb_023344_130 Hb_000037_010--Hb_023344_130 Hb_001819_010 Hb_001819_010 Hb_001085_230--Hb_001819_010 Hb_123560_050 Hb_123560_050 Hb_001085_230--Hb_123560_050 Hb_000563_120 Hb_000563_120 Hb_001085_230--Hb_000563_120 Hb_007919_030 Hb_007919_030 Hb_001085_230--Hb_007919_030 Hb_000377_160 Hb_000377_160 Hb_001085_230--Hb_000377_160 Hb_007420_010 Hb_007420_010 Hb_009803_030--Hb_007420_010 Hb_167272_010 Hb_167272_010 Hb_009803_030--Hb_167272_010 Hb_000819_010 Hb_000819_010 Hb_009803_030--Hb_000819_010 Hb_001515_030 Hb_001515_030 Hb_009803_030--Hb_001515_030 Hb_000280_110 Hb_000280_110 Hb_009803_030--Hb_000280_110 Hb_009803_030--Hb_046101_010 Hb_000163_250--Hb_007919_030 Hb_000008_080 Hb_000008_080 Hb_000163_250--Hb_000008_080 Hb_008783_020 Hb_008783_020 Hb_000163_250--Hb_008783_020 Hb_005276_220 Hb_005276_220 Hb_000163_250--Hb_005276_220 Hb_006788_100 Hb_006788_100 Hb_000163_250--Hb_006788_100 Hb_020285_010 Hb_020285_010 Hb_046101_010--Hb_020285_010 Hb_001369_070 Hb_001369_070 Hb_046101_010--Hb_001369_070 Hb_074312_020 Hb_074312_020 Hb_046101_010--Hb_074312_020 Hb_002276_100 Hb_002276_100 Hb_046101_010--Hb_002276_100 Hb_001894_040 Hb_001894_040 Hb_046101_010--Hb_001894_040 Hb_046101_010--Hb_000280_110 Hb_007420_020 Hb_007420_020 Hb_114310_050--Hb_007420_020 Hb_005054_280 Hb_005054_280 Hb_114310_050--Hb_005054_280 Hb_000614_190 Hb_000614_190 Hb_114310_050--Hb_000614_190 Hb_114310_050--Hb_007420_010 Hb_004306_140 Hb_004306_140 Hb_114310_050--Hb_004306_140 Hb_114310_050--Hb_001515_030 Hb_001153_090 Hb_001153_090 Hb_023344_130--Hb_001153_090 Hb_023344_130--Hb_006788_100 Hb_001160_020 Hb_001160_020 Hb_023344_130--Hb_001160_020 Hb_002078_240 Hb_002078_240 Hb_023344_130--Hb_002078_240 Hb_001956_080 Hb_001956_080 Hb_023344_130--Hb_001956_080 Hb_000501_040 Hb_000501_040 Hb_023344_130--Hb_000501_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0189558 8.39133 3.17061 3.3003 0.237598 0.0796021
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.151003 6.52845 4.2347

CAGE analysis