Hb_002078_240

Information

Type rubber biosynthesis
Description Gene Name: SRPP4
Location Contig2078: 181730-184180
Sequence    

Annotation

kegg
ID rcu:RCOM_1080400
description Small rubber particle protein, putative
nr
ID XP_012085677.1
description PREDICTED: REF/SRPP-like protein At1g67360 [Jatropha curcas]
swissprot
ID Q9FYF7
description REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1
trembl
ID A0A067JS73
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17959 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21440: 181921-184049 , PASA_asmbl_21442: 181978-183472 , PASA_asmbl_21443: 182401-182737
cDNA
(Sanger)
(ID:Location)		 051_D03.ab1: 181978-183472

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002078_240 0.0 rubber biosynthesis Gene Name: SRPP4 PREDICTED: REF/SRPP-like protein At1g67360 [Jatropha curcas]
2 Hb_023344_130 0.0985768297 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
3 Hb_000417_280 0.1218550322 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000037_010 0.1241269678 - - PREDICTED: cation/H(+) antiporter 18-like [Jatropha curcas]
5 Hb_003964_010 0.132075832 transcription factor TF Family: WRKY hypothetical protein POPTR_0008s09360g [Populus trichocarpa]
6 Hb_000477_110 0.1321080657 transcription factor TF Family: GRAS PREDICTED: DELLA protein SLR1-like [Jatropha curcas]
7 Hb_001268_300 0.1334232396 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001160_020 0.13492287 transcription factor TF Family: NF-YA Nuclear transcription factor Y subunit A-3, putative [Ricinus communis]
9 Hb_001153_090 0.1382281253 - - PREDICTED: protein FAM63A [Jatropha curcas]
10 Hb_006483_090 0.1384700834 - - PREDICTED: uncharacterized protein LOC105639979 [Jatropha curcas]
11 Hb_001123_170 0.1384756882 - - conserved hypothetical protein [Ricinus communis]
12 Hb_032717_010 0.1390882372 - - unnamed protein product [Vitis vinifera]
13 Hb_001689_030 0.14030498 - - PREDICTED: J domain-containing protein required for chloroplast accumulation response 1 [Jatropha curcas]
14 Hb_009193_060 0.1403877136 - - PREDICTED: ureide permease 1-like [Jatropha curcas]
15 Hb_000163_250 0.1408776707 - - unnamed protein product [Vitis vinifera]
16 Hb_001956_080 0.1410231807 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 14 [Jatropha curcas]
17 Hb_001538_050 0.1411689069 - - PREDICTED: TMV resistance protein N-like [Populus euphratica]
18 Hb_006788_100 0.142668805 - - PREDICTED: uncharacterized protein LOC105649919 isoform X1 [Jatropha curcas]
19 Hb_002078_250 0.143733769 - - conserved hypothetical protein [Ricinus communis]
20 Hb_064985_010 0.1457747389 - - Leucine-rich repeat transmembrane protein kinase, putative [Theobroma cacao]

Gene co-expression network

sample Hb_002078_240 Hb_002078_240 Hb_023344_130 Hb_023344_130 Hb_002078_240--Hb_023344_130 Hb_000417_280 Hb_000417_280 Hb_002078_240--Hb_000417_280 Hb_000037_010 Hb_000037_010 Hb_002078_240--Hb_000037_010 Hb_003964_010 Hb_003964_010 Hb_002078_240--Hb_003964_010 Hb_000477_110 Hb_000477_110 Hb_002078_240--Hb_000477_110 Hb_001268_300 Hb_001268_300 Hb_002078_240--Hb_001268_300 Hb_001153_090 Hb_001153_090 Hb_023344_130--Hb_001153_090 Hb_006788_100 Hb_006788_100 Hb_023344_130--Hb_006788_100 Hb_001160_020 Hb_001160_020 Hb_023344_130--Hb_001160_020 Hb_001956_080 Hb_001956_080 Hb_023344_130--Hb_001956_080 Hb_000501_040 Hb_000501_040 Hb_023344_130--Hb_000501_040 Hb_001008_110 Hb_001008_110 Hb_000417_280--Hb_001008_110 Hb_002833_020 Hb_002833_020 Hb_000417_280--Hb_002833_020 Hb_032717_010 Hb_032717_010 Hb_000417_280--Hb_032717_010 Hb_009193_060 Hb_009193_060 Hb_000417_280--Hb_009193_060 Hb_000417_280--Hb_001268_300 Hb_000739_160 Hb_000739_160 Hb_000417_280--Hb_000739_160 Hb_001085_230 Hb_001085_230 Hb_000037_010--Hb_001085_230 Hb_009803_030 Hb_009803_030 Hb_000037_010--Hb_009803_030 Hb_000163_250 Hb_000163_250 Hb_000037_010--Hb_000163_250 Hb_046101_010 Hb_046101_010 Hb_000037_010--Hb_046101_010 Hb_114310_050 Hb_114310_050 Hb_000037_010--Hb_114310_050 Hb_000037_010--Hb_023344_130 Hb_002078_250 Hb_002078_250 Hb_003964_010--Hb_002078_250 Hb_003656_170 Hb_003656_170 Hb_003964_010--Hb_003656_170 Hb_002324_050 Hb_002324_050 Hb_003964_010--Hb_002324_050 Hb_005649_010 Hb_005649_010 Hb_003964_010--Hb_005649_010 Hb_064985_010 Hb_064985_010 Hb_003964_010--Hb_064985_010 Hb_002343_020 Hb_002343_020 Hb_003964_010--Hb_002343_020 Hb_006483_090 Hb_006483_090 Hb_000477_110--Hb_006483_090 Hb_000472_020 Hb_000472_020 Hb_000477_110--Hb_000472_020 Hb_006269_010 Hb_006269_010 Hb_000477_110--Hb_006269_010 Hb_000477_110--Hb_001956_080 Hb_000477_110--Hb_001153_090 Hb_000613_250 Hb_000613_250 Hb_000477_110--Hb_000613_250 Hb_003517_100 Hb_003517_100 Hb_001268_300--Hb_003517_100 Hb_042202_020 Hb_042202_020 Hb_001268_300--Hb_042202_020 Hb_001268_300--Hb_009193_060 Hb_082683_010 Hb_082683_010 Hb_001268_300--Hb_082683_010 Hb_073973_020 Hb_073973_020 Hb_001268_300--Hb_073973_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.17946 135.537 99.8315 74.5182 12.2399 3.71504
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.47969 1.11348 1.99492 110.558 92.5482

CAGE analysis