Hb_000417_280

Information

Type -
Description -
Location Contig417: 223267-228457
Sequence    

Annotation

kegg
ID rcu:RCOM_1251140
description hypothetical protein
nr
ID XP_002522251.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S8D2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1251140 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41261: 222202-224737 , PASA_asmbl_41262: 222202-223393 , PASA_asmbl_41263: 223413-223829 , PASA_asmbl_41265: 226718-227729 , PASA_asmbl_41267: 228835-228972
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000417_280 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001008_110 0.0615777396 - - -
3 Hb_002833_020 0.0872463438 desease resistance Gene Name: LRR_4 PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
4 Hb_032717_010 0.0984331709 - - unnamed protein product [Vitis vinifera]
5 Hb_009193_060 0.1020315817 - - PREDICTED: ureide permease 1-like [Jatropha curcas]
6 Hb_001268_300 0.1032831071 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000739_160 0.1105659249 - - DNA binding protein, putative [Ricinus communis]
8 Hb_064985_010 0.1193357363 - - Leucine-rich repeat transmembrane protein kinase, putative [Theobroma cacao]
9 Hb_004096_220 0.1204457927 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
10 Hb_002078_240 0.1218550322 rubber biosynthesis Gene Name: SRPP4 PREDICTED: REF/SRPP-like protein At1g67360 [Jatropha curcas]
11 Hb_000527_140 0.1223772382 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
12 Hb_042202_020 0.1268762278 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
13 Hb_002660_040 0.1271262313 - - PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]
14 Hb_003142_060 0.1271635877 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
15 Hb_003106_110 0.1279716542 - - betaine aldehyde dehydrogenase 1, chloroplastic [Jatropha curcas]
16 Hb_011537_020 0.1287085041 - - PREDICTED: uncharacterized serine-rich protein C215.13-like [Jatropha curcas]
17 Hb_001488_280 0.1293135636 - - hypothetical protein JCGZ_19947 [Jatropha curcas]
18 Hb_004656_010 0.1301664362 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
19 Hb_001018_080 0.1306728032 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003106_230 0.1319054574 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000417_280 Hb_000417_280 Hb_001008_110 Hb_001008_110 Hb_000417_280--Hb_001008_110 Hb_002833_020 Hb_002833_020 Hb_000417_280--Hb_002833_020 Hb_032717_010 Hb_032717_010 Hb_000417_280--Hb_032717_010 Hb_009193_060 Hb_009193_060 Hb_000417_280--Hb_009193_060 Hb_001268_300 Hb_001268_300 Hb_000417_280--Hb_001268_300 Hb_000739_160 Hb_000739_160 Hb_000417_280--Hb_000739_160 Hb_001008_110--Hb_002833_020 Hb_064985_010 Hb_064985_010 Hb_001008_110--Hb_064985_010 Hb_003142_060 Hb_003142_060 Hb_001008_110--Hb_003142_060 Hb_001008_110--Hb_032717_010 Hb_042202_020 Hb_042202_020 Hb_001008_110--Hb_042202_020 Hb_000100_210 Hb_000100_210 Hb_002833_020--Hb_000100_210 Hb_000085_380 Hb_000085_380 Hb_002833_020--Hb_000085_380 Hb_000120_310 Hb_000120_310 Hb_002833_020--Hb_000120_310 Hb_002833_020--Hb_042202_020 Hb_006788_100 Hb_006788_100 Hb_032717_010--Hb_006788_100 Hb_005523_050 Hb_005523_050 Hb_032717_010--Hb_005523_050 Hb_032717_010--Hb_001268_300 Hb_001819_010 Hb_001819_010 Hb_032717_010--Hb_001819_010 Hb_009193_060--Hb_001268_300 Hb_003106_110 Hb_003106_110 Hb_009193_060--Hb_003106_110 Hb_009193_060--Hb_001008_110 Hb_011537_020 Hb_011537_020 Hb_009193_060--Hb_011537_020 Hb_004096_220 Hb_004096_220 Hb_009193_060--Hb_004096_220 Hb_003517_100 Hb_003517_100 Hb_001268_300--Hb_003517_100 Hb_001268_300--Hb_042202_020 Hb_082683_010 Hb_082683_010 Hb_001268_300--Hb_082683_010 Hb_073973_020 Hb_073973_020 Hb_001268_300--Hb_073973_020 Hb_000739_160--Hb_003106_110 Hb_000096_210 Hb_000096_210 Hb_000739_160--Hb_000096_210 Hb_006634_090 Hb_006634_090 Hb_000739_160--Hb_006634_090 Hb_006934_020 Hb_006934_020 Hb_000739_160--Hb_006934_020 Hb_002301_370 Hb_002301_370 Hb_000739_160--Hb_002301_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.594106 10.2897 7.36399 7.37753 0.728513 0.820633
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.246822 0.346823 0.0793443 12.9459 6.1044

CAGE analysis