Hb_006634_090

Information

Type -
Description -
Location Contig6634: 82746-84530
Sequence    

Annotation

kegg
ID pop:POPTR_0016s12480g
description POPTRDRAFT_825349; hypothetical protein
nr
ID XP_012087839.1
description PREDICTED: uncharacterized protein LOC105646581 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JNP9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25002 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53115: 82866-84452
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006634_090 0.0 - - PREDICTED: uncharacterized protein LOC105646581 [Jatropha curcas]
2 Hb_002450_180 0.0942055562 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000739_160 0.1042593066 - - DNA binding protein, putative [Ricinus communis]
4 Hb_000847_050 0.1042796033 - - PREDICTED: dCTP pyrophosphatase 1-like [Jatropha curcas]
5 Hb_010417_100 0.1044563483 - - PREDICTED: respiratory burst oxidase homolog protein A [Jatropha curcas]
6 Hb_000096_210 0.1065504274 - - PREDICTED: probable carboxylesterase 7 [Jatropha curcas]
7 Hb_064985_010 0.1085292726 - - Leucine-rich repeat transmembrane protein kinase, putative [Theobroma cacao]
8 Hb_001776_100 0.1086864041 - - PREDICTED: outer envelope pore protein 16, chloroplastic [Jatropha curcas]
9 Hb_006934_020 0.1086868997 - - hypothetical protein POPTR_0004s09051g [Populus trichocarpa]
10 Hb_005357_020 0.1106528881 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000411_050 0.112082752 - - hypothetical protein AMTR_s00066p00166230 [Amborella trichopoda]
12 Hb_000946_050 0.1133266377 - - cytochrome P450, putative [Ricinus communis]
13 Hb_003376_300 0.11371658 - - Aquaporin PIP2.2, putative [Ricinus communis]
14 Hb_007894_030 0.1169510145 - - calcium-dependent protein kinase, putative [Ricinus communis]
15 Hb_000085_220 0.1208872369 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006788_100 0.124199901 - - PREDICTED: uncharacterized protein LOC105649919 isoform X1 [Jatropha curcas]
17 Hb_001636_010 0.1264956089 - - hypothetical protein JCGZ_01264 [Jatropha curcas]
18 Hb_000092_030 0.1272776997 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
19 Hb_020285_010 0.1292453108 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3, partial [Pyrus x bretschneideri]
20 Hb_166009_010 0.1294627534 - - carbonyl reductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_006634_090 Hb_006634_090 Hb_002450_180 Hb_002450_180 Hb_006634_090--Hb_002450_180 Hb_000739_160 Hb_000739_160 Hb_006634_090--Hb_000739_160 Hb_000847_050 Hb_000847_050 Hb_006634_090--Hb_000847_050 Hb_010417_100 Hb_010417_100 Hb_006634_090--Hb_010417_100 Hb_000096_210 Hb_000096_210 Hb_006634_090--Hb_000096_210 Hb_064985_010 Hb_064985_010 Hb_006634_090--Hb_064985_010 Hb_000411_050 Hb_000411_050 Hb_002450_180--Hb_000411_050 Hb_000454_200 Hb_000454_200 Hb_002450_180--Hb_000454_200 Hb_002450_180--Hb_000847_050 Hb_000946_050 Hb_000946_050 Hb_002450_180--Hb_000946_050 Hb_003376_300 Hb_003376_300 Hb_002450_180--Hb_003376_300 Hb_003106_110 Hb_003106_110 Hb_000739_160--Hb_003106_110 Hb_000739_160--Hb_000096_210 Hb_006934_020 Hb_006934_020 Hb_000739_160--Hb_006934_020 Hb_002301_370 Hb_002301_370 Hb_000739_160--Hb_002301_370 Hb_000417_280 Hb_000417_280 Hb_000739_160--Hb_000417_280 Hb_000847_050--Hb_000454_200 Hb_000847_050--Hb_000411_050 Hb_000847_050--Hb_006934_020 Hb_000497_100 Hb_000497_100 Hb_000847_050--Hb_000497_100 Hb_005357_020 Hb_005357_020 Hb_010417_100--Hb_005357_020 Hb_007894_030 Hb_007894_030 Hb_010417_100--Hb_007894_030 Hb_001636_010 Hb_001636_010 Hb_010417_100--Hb_001636_010 Hb_000840_050 Hb_000840_050 Hb_010417_100--Hb_000840_050 Hb_000085_220 Hb_000085_220 Hb_010417_100--Hb_000085_220 Hb_010417_100--Hb_000497_100 Hb_000096_210--Hb_000946_050 Hb_009554_030 Hb_009554_030 Hb_000096_210--Hb_009554_030 Hb_014250_010 Hb_014250_010 Hb_000096_210--Hb_014250_010 Hb_039022_020 Hb_039022_020 Hb_000096_210--Hb_039022_020 Hb_004122_060 Hb_004122_060 Hb_000096_210--Hb_004122_060 Hb_005766_010 Hb_005766_010 Hb_000096_210--Hb_005766_010 Hb_001008_110 Hb_001008_110 Hb_064985_010--Hb_001008_110 Hb_064985_010--Hb_007894_030 Hb_064985_010--Hb_001636_010 Hb_000527_140 Hb_000527_140 Hb_064985_010--Hb_000527_140 Hb_005649_010 Hb_005649_010 Hb_064985_010--Hb_005649_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.274185 10.9921 8.43271 9.92971 0.0241714 0.0567598
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.384396 0.0864092 0 12.0804 4.72082

CAGE analysis