Hb_001008_110

Information

Type -
Description -
Location Contig1008: 110568-112838
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00486: 110548-110848 , PASA_asmbl_00487: 111226-111432 , PASA_asmbl_00488: 111591-112063
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001008_110 0.0 - - -
2 Hb_000417_280 0.0615777396 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002833_020 0.0835592725 desease resistance Gene Name: LRR_4 PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
4 Hb_064985_010 0.0983650036 - - Leucine-rich repeat transmembrane protein kinase, putative [Theobroma cacao]
5 Hb_003142_060 0.1056267841 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
6 Hb_032717_010 0.1095104782 - - unnamed protein product [Vitis vinifera]
7 Hb_042202_020 0.1099623586 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
8 Hb_006934_020 0.1117931808 - - hypothetical protein POPTR_0004s09051g [Populus trichocarpa]
9 Hb_000085_380 0.1136742747 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000527_140 0.1137606779 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
11 Hb_000739_160 0.1145718941 - - DNA binding protein, putative [Ricinus communis]
12 Hb_003106_230 0.1158595376 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like [Jatropha curcas]
13 Hb_025432_010 0.1169480021 - - hypothetical protein JCGZ_21627 [Jatropha curcas]
14 Hb_001268_300 0.1218041509 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002660_040 0.1247770118 - - PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]
16 Hb_010174_190 0.1264919564 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
17 Hb_002003_040 0.1265563487 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
18 Hb_003106_110 0.1271110473 - - betaine aldehyde dehydrogenase 1, chloroplastic [Jatropha curcas]
19 Hb_009193_060 0.1274604514 - - PREDICTED: ureide permease 1-like [Jatropha curcas]
20 Hb_004656_010 0.129114445 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]

Gene co-expression network

sample Hb_001008_110 Hb_001008_110 Hb_000417_280 Hb_000417_280 Hb_001008_110--Hb_000417_280 Hb_002833_020 Hb_002833_020 Hb_001008_110--Hb_002833_020 Hb_064985_010 Hb_064985_010 Hb_001008_110--Hb_064985_010 Hb_003142_060 Hb_003142_060 Hb_001008_110--Hb_003142_060 Hb_032717_010 Hb_032717_010 Hb_001008_110--Hb_032717_010 Hb_042202_020 Hb_042202_020 Hb_001008_110--Hb_042202_020 Hb_000417_280--Hb_002833_020 Hb_000417_280--Hb_032717_010 Hb_009193_060 Hb_009193_060 Hb_000417_280--Hb_009193_060 Hb_001268_300 Hb_001268_300 Hb_000417_280--Hb_001268_300 Hb_000739_160 Hb_000739_160 Hb_000417_280--Hb_000739_160 Hb_000100_210 Hb_000100_210 Hb_002833_020--Hb_000100_210 Hb_000085_380 Hb_000085_380 Hb_002833_020--Hb_000085_380 Hb_000120_310 Hb_000120_310 Hb_002833_020--Hb_000120_310 Hb_002833_020--Hb_042202_020 Hb_007894_030 Hb_007894_030 Hb_064985_010--Hb_007894_030 Hb_006634_090 Hb_006634_090 Hb_064985_010--Hb_006634_090 Hb_001636_010 Hb_001636_010 Hb_064985_010--Hb_001636_010 Hb_000527_140 Hb_000527_140 Hb_064985_010--Hb_000527_140 Hb_005649_010 Hb_005649_010 Hb_064985_010--Hb_005649_010 Hb_000003_020 Hb_000003_020 Hb_003142_060--Hb_000003_020 Hb_000834_040 Hb_000834_040 Hb_003142_060--Hb_000834_040 Hb_003106_230 Hb_003106_230 Hb_003142_060--Hb_003106_230 Hb_003142_060--Hb_042202_020 Hb_000024_130 Hb_000024_130 Hb_003142_060--Hb_000024_130 Hb_006788_100 Hb_006788_100 Hb_032717_010--Hb_006788_100 Hb_005523_050 Hb_005523_050 Hb_032717_010--Hb_005523_050 Hb_032717_010--Hb_001268_300 Hb_001819_010 Hb_001819_010 Hb_032717_010--Hb_001819_010 Hb_033234_010 Hb_033234_010 Hb_042202_020--Hb_033234_010 Hb_042202_020--Hb_001268_300 Hb_042202_020--Hb_000527_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.552388 8.44639 5.45633 7.27625 0.20825 0.800321
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.20233 0.265332 0.167733 10.7739 4.74811

CAGE analysis