Hb_009193_060

Information

Type -
Description -
Location Contig9193: 27311-42639
Sequence    

Annotation

kegg
ID rcu:RCOM_1620850
description Ureide permease, putative
nr
ID XP_012067772.1
description PREDICTED: ureide permease 1-like [Jatropha curcas]
swissprot
ID Q9ZQ89
description Ureide permease 2 OS=Arabidopsis thaliana GN=UPS2 PE=1 SV=2
trembl
ID A0A0E0FCA5
description Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1
Gene Ontology
ID GO:0016021
description ureide permease 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62326: 27374-28002 , PASA_asmbl_62327: 28468-30325 , PASA_asmbl_62328: 30532-31282 , PASA_asmbl_62329: 40163-41496
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009193_060 0.0 - - PREDICTED: ureide permease 1-like [Jatropha curcas]
2 Hb_000417_280 0.1020315817 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001268_300 0.1065393428 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003106_110 0.1203657996 - - betaine aldehyde dehydrogenase 1, chloroplastic [Jatropha curcas]
5 Hb_001008_110 0.1274604514 - - -
6 Hb_011537_020 0.1284230629 - - PREDICTED: uncharacterized serine-rich protein C215.13-like [Jatropha curcas]
7 Hb_004096_220 0.1286375594 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
8 Hb_000739_160 0.1288831898 - - DNA binding protein, putative [Ricinus communis]
9 Hb_002811_020 0.1314271189 - - Cysteine synthase [Morus notabilis]
10 Hb_000438_010 0.1320923093 - - -
11 Hb_000574_370 0.133840324 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
12 Hb_002833_020 0.1359398633 desease resistance Gene Name: LRR_4 PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
13 Hb_015306_010 0.1374838536 - - PREDICTED: uncharacterized protein LOC105636357 [Jatropha curcas]
14 Hb_002078_240 0.1403877136 rubber biosynthesis Gene Name: SRPP4 PREDICTED: REF/SRPP-like protein At1g67360 [Jatropha curcas]
15 Hb_032717_010 0.1418392708 - - unnamed protein product [Vitis vinifera]
16 Hb_001307_200 0.1430090479 - - PREDICTED: uncharacterized protein LOC105644489 [Jatropha curcas]
17 Hb_006934_020 0.143091044 - - hypothetical protein POPTR_0004s09051g [Populus trichocarpa]
18 Hb_000438_020 0.1463017744 - - leucine-rich repeat-containing protein 2, lrrc2, putative [Ricinus communis]
19 Hb_000215_250 0.1464916914 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
20 Hb_003964_010 0.1488756471 transcription factor TF Family: WRKY hypothetical protein POPTR_0008s09360g [Populus trichocarpa]

Gene co-expression network

sample Hb_009193_060 Hb_009193_060 Hb_000417_280 Hb_000417_280 Hb_009193_060--Hb_000417_280 Hb_001268_300 Hb_001268_300 Hb_009193_060--Hb_001268_300 Hb_003106_110 Hb_003106_110 Hb_009193_060--Hb_003106_110 Hb_001008_110 Hb_001008_110 Hb_009193_060--Hb_001008_110 Hb_011537_020 Hb_011537_020 Hb_009193_060--Hb_011537_020 Hb_004096_220 Hb_004096_220 Hb_009193_060--Hb_004096_220 Hb_000417_280--Hb_001008_110 Hb_002833_020 Hb_002833_020 Hb_000417_280--Hb_002833_020 Hb_032717_010 Hb_032717_010 Hb_000417_280--Hb_032717_010 Hb_000417_280--Hb_001268_300 Hb_000739_160 Hb_000739_160 Hb_000417_280--Hb_000739_160 Hb_003517_100 Hb_003517_100 Hb_001268_300--Hb_003517_100 Hb_042202_020 Hb_042202_020 Hb_001268_300--Hb_042202_020 Hb_082683_010 Hb_082683_010 Hb_001268_300--Hb_082683_010 Hb_073973_020 Hb_073973_020 Hb_001268_300--Hb_073973_020 Hb_003106_110--Hb_000739_160 Hb_015306_010 Hb_015306_010 Hb_003106_110--Hb_015306_010 Hb_002301_370 Hb_002301_370 Hb_003106_110--Hb_002301_370 Hb_005485_070 Hb_005485_070 Hb_003106_110--Hb_005485_070 Hb_000085_380 Hb_000085_380 Hb_003106_110--Hb_000085_380 Hb_000760_080 Hb_000760_080 Hb_003106_110--Hb_000760_080 Hb_001008_110--Hb_002833_020 Hb_064985_010 Hb_064985_010 Hb_001008_110--Hb_064985_010 Hb_003142_060 Hb_003142_060 Hb_001008_110--Hb_003142_060 Hb_001008_110--Hb_032717_010 Hb_001008_110--Hb_042202_020 Hb_001018_080 Hb_001018_080 Hb_011537_020--Hb_001018_080 Hb_008899_030 Hb_008899_030 Hb_011537_020--Hb_008899_030 Hb_011537_020--Hb_000739_160 Hb_002307_010 Hb_002307_010 Hb_011537_020--Hb_002307_010 Hb_004627_020 Hb_004627_020 Hb_011537_020--Hb_004627_020 Hb_011537_020--Hb_015306_010 Hb_012033_010 Hb_012033_010 Hb_004096_220--Hb_012033_010 Hb_001307_200 Hb_001307_200 Hb_004096_220--Hb_001307_200 Hb_000261_310 Hb_000261_310 Hb_004096_220--Hb_000261_310 Hb_083078_010 Hb_083078_010 Hb_004096_220--Hb_083078_010 Hb_000438_010 Hb_000438_010 Hb_004096_220--Hb_000438_010 Hb_004096_220--Hb_001268_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.865311 5.68815 4.63334 4.88959 0.626542 0.0853885
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.157592 0.161214 0.07107 8.26224 5.38959

CAGE analysis