Hb_000438_010

Information

Type -
Description -
Location Contig438: 5198-11259
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42553: 10333-11207 , PASA_asmbl_42554: 5006-22840
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000438_010 0.0 - - -
2 Hb_000737_010 0.1018782042 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X1 [Jatropha curcas]
3 Hb_004096_220 0.1050994705 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
4 Hb_000318_170 0.1100035854 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
5 Hb_007575_030 0.1102987248 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
6 Hb_000261_310 0.1185888204 - - PREDICTED: UV radiation resistance-associated gene protein isoform X3 [Jatropha curcas]
7 Hb_003106_110 0.1203146226 - - betaine aldehyde dehydrogenase 1, chloroplastic [Jatropha curcas]
8 Hb_000739_160 0.1224348684 - - DNA binding protein, putative [Ricinus communis]
9 Hb_001277_400 0.1273664619 transcription factor TF Family: Tify PREDICTED: protein TIFY 4B isoform X3 [Jatropha curcas]
10 Hb_000116_240 0.1275477213 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]
11 Hb_000085_380 0.1276614944 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005485_070 0.1284169009 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
13 Hb_000791_050 0.129309729 - - PREDICTED: uncharacterized protein LOC105636760 [Jatropha curcas]
14 Hb_003106_230 0.1308115863 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like [Jatropha curcas]
15 Hb_000024_130 0.131214577 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000417_280 0.1320670348 - - conserved hypothetical protein [Ricinus communis]
17 Hb_009193_060 0.1320923093 - - PREDICTED: ureide permease 1-like [Jatropha curcas]
18 Hb_001221_390 0.1330456826 - - Phospholipase C 4 precursor, putative [Ricinus communis]
19 Hb_000165_070 0.1368681729 - - hypothetical protein JCGZ_01211 [Jatropha curcas]
20 Hb_000760_080 0.1387825552 - - mutt domain protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000438_010 Hb_000438_010 Hb_000737_010 Hb_000737_010 Hb_000438_010--Hb_000737_010 Hb_004096_220 Hb_004096_220 Hb_000438_010--Hb_004096_220 Hb_000318_170 Hb_000318_170 Hb_000438_010--Hb_000318_170 Hb_007575_030 Hb_007575_030 Hb_000438_010--Hb_007575_030 Hb_000261_310 Hb_000261_310 Hb_000438_010--Hb_000261_310 Hb_003106_110 Hb_003106_110 Hb_000438_010--Hb_003106_110 Hb_000737_010--Hb_007575_030 Hb_000165_070 Hb_000165_070 Hb_000737_010--Hb_000165_070 Hb_000791_050 Hb_000791_050 Hb_000737_010--Hb_000791_050 Hb_000737_010--Hb_004096_220 Hb_000936_090 Hb_000936_090 Hb_000737_010--Hb_000936_090 Hb_012033_010 Hb_012033_010 Hb_004096_220--Hb_012033_010 Hb_001307_200 Hb_001307_200 Hb_004096_220--Hb_001307_200 Hb_004096_220--Hb_000261_310 Hb_083078_010 Hb_083078_010 Hb_004096_220--Hb_083078_010 Hb_001268_300 Hb_001268_300 Hb_004096_220--Hb_001268_300 Hb_005485_070 Hb_005485_070 Hb_000318_170--Hb_005485_070 Hb_000318_170--Hb_000791_050 Hb_000309_030 Hb_000309_030 Hb_000318_170--Hb_000309_030 Hb_000116_240 Hb_000116_240 Hb_000318_170--Hb_000116_240 Hb_000731_210 Hb_000731_210 Hb_000318_170--Hb_000731_210 Hb_000318_170--Hb_007575_030 Hb_004883_020 Hb_004883_020 Hb_007575_030--Hb_004883_020 Hb_007575_030--Hb_000261_310 Hb_007575_030--Hb_000165_070 Hb_007575_030--Hb_000116_240 Hb_000042_380 Hb_000042_380 Hb_007575_030--Hb_000042_380 Hb_000256_160 Hb_000256_160 Hb_000261_310--Hb_000256_160 Hb_000261_310--Hb_000309_030 Hb_000094_150 Hb_000094_150 Hb_000261_310--Hb_000094_150 Hb_000261_310--Hb_000116_240 Hb_000739_160 Hb_000739_160 Hb_003106_110--Hb_000739_160 Hb_015306_010 Hb_015306_010 Hb_003106_110--Hb_015306_010 Hb_002301_370 Hb_002301_370 Hb_003106_110--Hb_002301_370 Hb_003106_110--Hb_005485_070 Hb_000085_380 Hb_000085_380 Hb_003106_110--Hb_000085_380 Hb_000760_080 Hb_000760_080 Hb_003106_110--Hb_000760_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.346161 1.86951 2.74196 2.39184 0.212089 0.194133
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.165485 0.191519 0 2.75697 1.84108

CAGE analysis