Hb_000936_090

Information

Type -
Description -
Location Contig936: 175694-178611
Sequence    

Annotation

kegg
ID csv:101221333
description putative E3 ubiquitin-protein ligase RING1a-like
nr
ID XP_012088245.1
description PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JMQ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25760 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase ring1a isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000936_090 0.0 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X2 [Jatropha curcas]
2 Hb_000737_010 0.1353161135 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X1 [Jatropha curcas]
3 Hb_000438_010 0.1543621733 - - -
4 Hb_004864_020 0.1553657761 - - Polyprotein, putative [Solanum demissum]
5 Hb_001522_040 0.1594270006 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
6 Hb_002411_160 0.1609868948 - - PREDICTED: uncharacterized protein LOC105631262 isoform X1 [Jatropha curcas]
7 Hb_000803_120 0.161338161 - - PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X1 [Jatropha curcas]
8 Hb_002833_020 0.1635230048 desease resistance Gene Name: LRR_4 PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
9 Hb_001001_090 0.1685071065 - - PREDICTED: uncharacterized protein LOC105633658 [Jatropha curcas]
10 Hb_007575_030 0.168876238 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
11 Hb_000261_310 0.1692468656 - - PREDICTED: UV radiation resistance-associated gene protein isoform X3 [Jatropha curcas]
12 Hb_004096_220 0.1698231193 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
13 Hb_000120_310 0.1725106499 - - Gibberellin 3-beta-dioxygenase, putative [Ricinus communis]
14 Hb_000853_330 0.1725163531 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
15 Hb_001596_020 0.1727304307 - - hypothetical protein CICLE_v10014140mg [Citrus clementina]
16 Hb_000015_150 0.1741045832 - - Ubiquitin-conjugating enzyme E2 7 family protein [Populus trichocarpa]
17 Hb_000100_210 0.1746562479 - - PREDICTED: selenium-binding protein 1-like [Jatropha curcas]
18 Hb_083078_010 0.1748190751 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
19 Hb_000085_380 0.175110974 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003050_150 0.1759207097 - - endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000936_090 Hb_000936_090 Hb_000737_010 Hb_000737_010 Hb_000936_090--Hb_000737_010 Hb_000438_010 Hb_000438_010 Hb_000936_090--Hb_000438_010 Hb_004864_020 Hb_004864_020 Hb_000936_090--Hb_004864_020 Hb_001522_040 Hb_001522_040 Hb_000936_090--Hb_001522_040 Hb_002411_160 Hb_002411_160 Hb_000936_090--Hb_002411_160 Hb_000803_120 Hb_000803_120 Hb_000936_090--Hb_000803_120 Hb_000737_010--Hb_000438_010 Hb_007575_030 Hb_007575_030 Hb_000737_010--Hb_007575_030 Hb_000165_070 Hb_000165_070 Hb_000737_010--Hb_000165_070 Hb_000791_050 Hb_000791_050 Hb_000737_010--Hb_000791_050 Hb_004096_220 Hb_004096_220 Hb_000737_010--Hb_004096_220 Hb_000438_010--Hb_004096_220 Hb_000318_170 Hb_000318_170 Hb_000438_010--Hb_000318_170 Hb_000438_010--Hb_007575_030 Hb_000261_310 Hb_000261_310 Hb_000438_010--Hb_000261_310 Hb_003106_110 Hb_003106_110 Hb_000438_010--Hb_003106_110 Hb_000714_120 Hb_000714_120 Hb_004864_020--Hb_000714_120 Hb_000418_150 Hb_000418_150 Hb_004864_020--Hb_000418_150 Hb_002099_060 Hb_002099_060 Hb_004864_020--Hb_002099_060 Hb_029748_020 Hb_029748_020 Hb_004864_020--Hb_029748_020 Hb_000139_510 Hb_000139_510 Hb_004864_020--Hb_000139_510 Hb_000438_020 Hb_000438_020 Hb_004864_020--Hb_000438_020 Hb_052117_010 Hb_052117_010 Hb_001522_040--Hb_052117_010 Hb_000100_210 Hb_000100_210 Hb_001522_040--Hb_000100_210 Hb_009745_010 Hb_009745_010 Hb_001522_040--Hb_009745_010 Hb_001898_020 Hb_001898_020 Hb_001522_040--Hb_001898_020 Hb_001522_040--Hb_029748_020 Hb_002685_030 Hb_002685_030 Hb_001522_040--Hb_002685_030 Hb_086639_050 Hb_086639_050 Hb_002411_160--Hb_086639_050 Hb_080147_020 Hb_080147_020 Hb_002411_160--Hb_080147_020 Hb_001001_090 Hb_001001_090 Hb_002411_160--Hb_001001_090 Hb_000649_330 Hb_000649_330 Hb_002411_160--Hb_000649_330 Hb_114943_020 Hb_114943_020 Hb_002411_160--Hb_114943_020 Hb_000098_180 Hb_000098_180 Hb_002411_160--Hb_000098_180 Hb_000803_120--Hb_007575_030 Hb_000309_030 Hb_000309_030 Hb_000803_120--Hb_000309_030 Hb_005694_180 Hb_005694_180 Hb_000803_120--Hb_005694_180 Hb_000661_220 Hb_000661_220 Hb_000803_120--Hb_000661_220 Hb_004297_090 Hb_004297_090 Hb_000803_120--Hb_004297_090 Hb_000567_090 Hb_000567_090 Hb_000803_120--Hb_000567_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.404938 4.34198 5.05878 3.99121 0.28541 1.92488
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.233155 0.366406 0 3.9692 2.96438

CAGE analysis