Hb_000661_220

Information

Type transcription factor
Description TF Family: C3H
Location Contig661: 244267-249096
Sequence    

Annotation

kegg
ID rcu:RCOM_1578730
description nucleic acid binding protein, putative
nr
ID XP_012090042.1
description PREDICTED: zinc finger CCCH domain-containing protein 55-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JE29
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25952 PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger ccch domain-containing protein 55-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52987: 244371-248057 , PASA_asmbl_52988: 244031-244699 , PASA_asmbl_52991: 248456-248970
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000661_220 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 55-like [Jatropha curcas]
2 Hb_024758_020 0.1003267767 - - acyl-CoA binding protein 3B [Vernicia fordii]
3 Hb_001677_100 0.1122277357 - - delta1-pyrroline-5-carboxylate synthase [Manihot esculenta]
4 Hb_000567_090 0.117144315 - - PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Jatropha curcas]
5 Hb_000000_330 0.1243930002 - - PREDICTED: uncharacterized protein LOC105633747 [Jatropha curcas]
6 Hb_000803_120 0.1246976046 - - PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X1 [Jatropha curcas]
7 Hb_002849_050 0.1267146916 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
8 Hb_002317_010 0.1271928587 - - PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Jatropha curcas]
9 Hb_000649_330 0.1276395312 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]
10 Hb_052135_020 0.128987329 - - PREDICTED: MAP kinase kinase MKK1/SSP32-like [Jatropha curcas]
11 Hb_002808_020 0.1290782147 - - PREDICTED: uncharacterized protein LOC105630318 isoform X1 [Jatropha curcas]
12 Hb_001018_060 0.1304025147 - - hypothetical protein B456_001G028000 [Gossypium raimondii]
13 Hb_000866_070 0.1304903049 - - PREDICTED: LOW QUALITY PROTEIN: SKP1-like protein 21 [Jatropha curcas]
14 Hb_005833_030 0.1315131432 - - PREDICTED: uncharacterized membrane protein At1g16860 [Jatropha curcas]
15 Hb_114943_020 0.134820489 - - PREDICTED: NADPH--cytochrome P450 reductase 2 [Jatropha curcas]
16 Hb_004297_090 0.135082005 - - PREDICTED: DNA polymerase epsilon catalytic subunit A [Jatropha curcas]
17 Hb_000678_010 0.1363997886 - - PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Jatropha curcas]
18 Hb_074399_010 0.1366808865 - - PREDICTED: phragmoplast orienting kinesin-1 isoform X1 [Populus euphratica]
19 Hb_000248_100 0.1392080369 - - PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]
20 Hb_011214_110 0.1397602918 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000661_220 Hb_000661_220 Hb_024758_020 Hb_024758_020 Hb_000661_220--Hb_024758_020 Hb_001677_100 Hb_001677_100 Hb_000661_220--Hb_001677_100 Hb_000567_090 Hb_000567_090 Hb_000661_220--Hb_000567_090 Hb_000000_330 Hb_000000_330 Hb_000661_220--Hb_000000_330 Hb_000803_120 Hb_000803_120 Hb_000661_220--Hb_000803_120 Hb_002849_050 Hb_002849_050 Hb_000661_220--Hb_002849_050 Hb_024758_020--Hb_002849_050 Hb_158845_060 Hb_158845_060 Hb_024758_020--Hb_158845_060 Hb_005298_020 Hb_005298_020 Hb_024758_020--Hb_005298_020 Hb_000297_030 Hb_000297_030 Hb_024758_020--Hb_000297_030 Hb_032823_020 Hb_032823_020 Hb_024758_020--Hb_032823_020 Hb_003964_110 Hb_003964_110 Hb_024758_020--Hb_003964_110 Hb_004297_090 Hb_004297_090 Hb_001677_100--Hb_004297_090 Hb_001434_020 Hb_001434_020 Hb_001677_100--Hb_001434_020 Hb_009296_020 Hb_009296_020 Hb_001677_100--Hb_009296_020 Hb_000260_400 Hb_000260_400 Hb_001677_100--Hb_000260_400 Hb_011214_110 Hb_011214_110 Hb_001677_100--Hb_011214_110 Hb_001677_100--Hb_002849_050 Hb_080147_020 Hb_080147_020 Hb_000567_090--Hb_080147_020 Hb_052135_020 Hb_052135_020 Hb_000567_090--Hb_052135_020 Hb_086639_050 Hb_086639_050 Hb_000567_090--Hb_086639_050 Hb_001221_580 Hb_001221_580 Hb_000567_090--Hb_001221_580 Hb_000098_180 Hb_000098_180 Hb_000567_090--Hb_000098_180 Hb_001117_080 Hb_001117_080 Hb_000567_090--Hb_001117_080 Hb_074399_010 Hb_074399_010 Hb_000000_330--Hb_074399_010 Hb_006775_120 Hb_006775_120 Hb_000000_330--Hb_006775_120 Hb_164010_050 Hb_164010_050 Hb_000000_330--Hb_164010_050 Hb_000003_030 Hb_000003_030 Hb_000000_330--Hb_000003_030 Hb_002783_220 Hb_002783_220 Hb_000000_330--Hb_002783_220 Hb_003540_050 Hb_003540_050 Hb_000000_330--Hb_003540_050 Hb_007575_030 Hb_007575_030 Hb_000803_120--Hb_007575_030 Hb_000309_030 Hb_000309_030 Hb_000803_120--Hb_000309_030 Hb_005694_180 Hb_005694_180 Hb_000803_120--Hb_005694_180 Hb_000803_120--Hb_004297_090 Hb_000803_120--Hb_000567_090 Hb_005741_040 Hb_005741_040 Hb_002849_050--Hb_005741_040 Hb_011188_010 Hb_011188_010 Hb_002849_050--Hb_011188_010 Hb_002849_050--Hb_009296_020 Hb_001279_020 Hb_001279_020 Hb_002849_050--Hb_001279_020 Hb_001414_010 Hb_001414_010 Hb_002849_050--Hb_001414_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.82002 4.74266 13.2005 9.64712 2.61339 4.28959
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.59654 1.12053 1.03941 8.03983 4.54071

CAGE analysis