Hb_052135_020

Information

Type -
Description -
Location Contig52135: 17745-23535
Sequence    

Annotation

kegg
ID rcu:RCOM_1000600
description map3k delta-1 protein kinase, putative (EC:2.7.11.25)
nr
ID XP_012084067.1
description PREDICTED: MAP kinase kinase MKK1/SSP32-like [Jatropha curcas]
swissprot
ID Q9FPR3
description Serine/threonine-protein kinase EDR1 OS=Arabidopsis thaliana GN=EDR1 PE=1 SV=1
trembl
ID A0A067K6L3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18990 PE=4 SV=1
Gene Ontology
ID GO:0005622
description map3k delta-1 protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46775: 19957-20203
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_052135_020 0.0 - - PREDICTED: MAP kinase kinase MKK1/SSP32-like [Jatropha curcas]
2 Hb_002317_010 0.094591899 - - PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Jatropha curcas]
3 Hb_129204_020 0.1006657995 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 4 [Jatropha curcas]
4 Hb_000567_090 0.1079492202 - - PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Jatropha curcas]
5 Hb_010068_070 0.1079648813 - - calcium-dependent protein kinase, putative [Ricinus communis]
6 Hb_024758_020 0.10982991 - - acyl-CoA binding protein 3B [Vernicia fordii]
7 Hb_005833_030 0.1142688838 - - PREDICTED: uncharacterized membrane protein At1g16860 [Jatropha curcas]
8 Hb_027043_010 0.1143435066 - - PREDICTED: glycerophosphodiester phosphodiesterase GDPD4 [Jatropha curcas]
9 Hb_000363_410 0.1148157186 - - hypothetical protein JCGZ_00955 [Jatropha curcas]
10 Hb_002687_060 0.1151960932 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
11 Hb_002849_050 0.1167409672 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
12 Hb_005741_040 0.1231348206 - - PREDICTED: probable receptor-like protein kinase At1g49730 [Jatropha curcas]
13 Hb_000890_160 0.1232045956 - - PREDICTED: anaphase-promoting complex subunit 7 [Jatropha curcas]
14 Hb_004837_220 0.1255255569 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
15 Hb_000258_090 0.1265474413 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
16 Hb_000029_170 0.1274640072 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 89-like [Jatropha curcas]
17 Hb_001021_070 0.1274880855 - - unnamed protein product [Vitis vinifera]
18 Hb_000661_220 0.128987329 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 55-like [Jatropha curcas]
19 Hb_027760_060 0.1292226556 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
20 Hb_080147_020 0.1300472059 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_052135_020 Hb_052135_020 Hb_002317_010 Hb_002317_010 Hb_052135_020--Hb_002317_010 Hb_129204_020 Hb_129204_020 Hb_052135_020--Hb_129204_020 Hb_000567_090 Hb_000567_090 Hb_052135_020--Hb_000567_090 Hb_010068_070 Hb_010068_070 Hb_052135_020--Hb_010068_070 Hb_024758_020 Hb_024758_020 Hb_052135_020--Hb_024758_020 Hb_005833_030 Hb_005833_030 Hb_052135_020--Hb_005833_030 Hb_027760_060 Hb_027760_060 Hb_002317_010--Hb_027760_060 Hb_000029_170 Hb_000029_170 Hb_002317_010--Hb_000029_170 Hb_002687_180 Hb_002687_180 Hb_002317_010--Hb_002687_180 Hb_000101_390 Hb_000101_390 Hb_002317_010--Hb_000101_390 Hb_000260_400 Hb_000260_400 Hb_002317_010--Hb_000260_400 Hb_001221_580 Hb_001221_580 Hb_129204_020--Hb_001221_580 Hb_004837_220 Hb_004837_220 Hb_129204_020--Hb_004837_220 Hb_129204_020--Hb_002317_010 Hb_002107_100 Hb_002107_100 Hb_129204_020--Hb_002107_100 Hb_158445_020 Hb_158445_020 Hb_129204_020--Hb_158445_020 Hb_080147_020 Hb_080147_020 Hb_000567_090--Hb_080147_020 Hb_086639_050 Hb_086639_050 Hb_000567_090--Hb_086639_050 Hb_000567_090--Hb_001221_580 Hb_000098_180 Hb_000098_180 Hb_000567_090--Hb_000098_180 Hb_001117_080 Hb_001117_080 Hb_000567_090--Hb_001117_080 Hb_009372_020 Hb_009372_020 Hb_010068_070--Hb_009372_020 Hb_060094_010 Hb_060094_010 Hb_010068_070--Hb_060094_010 Hb_000890_160 Hb_000890_160 Hb_010068_070--Hb_000890_160 Hb_000156_090 Hb_000156_090 Hb_010068_070--Hb_000156_090 Hb_033363_010 Hb_033363_010 Hb_010068_070--Hb_033363_010 Hb_002965_050 Hb_002965_050 Hb_010068_070--Hb_002965_050 Hb_002849_050 Hb_002849_050 Hb_024758_020--Hb_002849_050 Hb_158845_060 Hb_158845_060 Hb_024758_020--Hb_158845_060 Hb_005298_020 Hb_005298_020 Hb_024758_020--Hb_005298_020 Hb_000297_030 Hb_000297_030 Hb_024758_020--Hb_000297_030 Hb_032823_020 Hb_032823_020 Hb_024758_020--Hb_032823_020 Hb_003964_110 Hb_003964_110 Hb_024758_020--Hb_003964_110 Hb_002687_060 Hb_002687_060 Hb_005833_030--Hb_002687_060 Hb_000994_020 Hb_000994_020 Hb_005833_030--Hb_000994_020 Hb_005833_030--Hb_000297_030 Hb_005833_030--Hb_000890_160 Hb_000260_770 Hb_000260_770 Hb_005833_030--Hb_000260_770 Hb_152910_010 Hb_152910_010 Hb_005833_030--Hb_152910_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.824741 2.8956 4.70208 2.9689 0.716596 1.23848
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.566041 0.318157 1.23932 3.27291 1.65305

CAGE analysis