Hb_158445_020

Information

Type -
Description -
Location Contig158445: 12453-13784
Sequence    

Annotation

kegg
ID rcu:RCOM_0365370
description hypothetical protein
nr
ID XP_002529226.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O80582
description F-box/kelch-repeat protein At2g44130 OS=Arabidopsis thaliana GN=At2g44130 PE=2 SV=2
trembl
ID B9STA7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0365370 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_158445_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_008054_040 0.1090839947 - - PREDICTED: cullin-4 [Jatropha curcas]
3 Hb_001396_010 0.1118885041 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
4 Hb_000229_050 0.1150926403 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
5 Hb_003839_010 0.1170135909 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
6 Hb_016734_020 0.1171535143 - - sugar transporter, putative [Ricinus communis]
7 Hb_002107_100 0.1214152693 - - PREDICTED: la-related protein 1C-like isoform X3 [Jatropha curcas]
8 Hb_000161_240 0.1224067451 - - PREDICTED: ion channel DMI1-like isoform X1 [Jatropha curcas]
9 Hb_012799_150 0.1229339129 - - PREDICTED: LOW QUALITY PROTEIN: methyl-CpG-binding domain-containing protein 13 [Jatropha curcas]
10 Hb_010872_050 0.123181005 - - hypothetical protein B456_007G078100 [Gossypium raimondii]
11 Hb_129204_020 0.1248129733 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 4 [Jatropha curcas]
12 Hb_032823_020 0.1255003625 - - conserved hypothetical protein [Ricinus communis]
13 Hb_012633_050 0.1259090976 - - zinc finger protein, putative [Ricinus communis]
14 Hb_000260_770 0.1260165106 - - er lumen protein retaining receptor, putative [Ricinus communis]
15 Hb_000270_700 0.1267834013 - - PREDICTED: protease Do-like 9 [Populus euphratica]
16 Hb_000034_110 0.1269463633 - - sentrin/sumo-specific protease, putative [Ricinus communis]
17 Hb_003687_120 0.1308168937 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
18 Hb_052135_020 0.1315343427 - - PREDICTED: MAP kinase kinase MKK1/SSP32-like [Jatropha curcas]
19 Hb_004267_060 0.1343690638 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
20 Hb_000101_390 0.1353974364 - - PREDICTED: mucin-5B [Jatropha curcas]

Gene co-expression network

sample Hb_158445_020 Hb_158445_020 Hb_008054_040 Hb_008054_040 Hb_158445_020--Hb_008054_040 Hb_001396_010 Hb_001396_010 Hb_158445_020--Hb_001396_010 Hb_000229_050 Hb_000229_050 Hb_158445_020--Hb_000229_050 Hb_003839_010 Hb_003839_010 Hb_158445_020--Hb_003839_010 Hb_016734_020 Hb_016734_020 Hb_158445_020--Hb_016734_020 Hb_002107_100 Hb_002107_100 Hb_158445_020--Hb_002107_100 Hb_005333_140 Hb_005333_140 Hb_008054_040--Hb_005333_140 Hb_009158_060 Hb_009158_060 Hb_008054_040--Hb_009158_060 Hb_033642_120 Hb_033642_120 Hb_008054_040--Hb_033642_120 Hb_000996_020 Hb_000996_020 Hb_008054_040--Hb_000996_020 Hb_032823_020 Hb_032823_020 Hb_008054_040--Hb_032823_020 Hb_002461_020 Hb_002461_020 Hb_008054_040--Hb_002461_020 Hb_000622_280 Hb_000622_280 Hb_001396_010--Hb_000622_280 Hb_001080_140 Hb_001080_140 Hb_001396_010--Hb_001080_140 Hb_000866_140 Hb_000866_140 Hb_001396_010--Hb_000866_140 Hb_003711_010 Hb_003711_010 Hb_001396_010--Hb_003711_010 Hb_007765_030 Hb_007765_030 Hb_001396_010--Hb_007765_030 Hb_000174_140 Hb_000174_140 Hb_001396_010--Hb_000174_140 Hb_008206_080 Hb_008206_080 Hb_000229_050--Hb_008206_080 Hb_000579_080 Hb_000579_080 Hb_000229_050--Hb_000579_080 Hb_012633_050 Hb_012633_050 Hb_000229_050--Hb_012633_050 Hb_011716_010 Hb_011716_010 Hb_000229_050--Hb_011716_010 Hb_000739_240 Hb_000739_240 Hb_000229_050--Hb_000739_240 Hb_000101_390 Hb_000101_390 Hb_000229_050--Hb_000101_390 Hb_001279_170 Hb_001279_170 Hb_003839_010--Hb_001279_170 Hb_004787_080 Hb_004787_080 Hb_003839_010--Hb_004787_080 Hb_000321_140 Hb_000321_140 Hb_003839_010--Hb_000321_140 Hb_029388_010 Hb_029388_010 Hb_003839_010--Hb_029388_010 Hb_001009_280 Hb_001009_280 Hb_003839_010--Hb_001009_280 Hb_010872_050 Hb_010872_050 Hb_016734_020--Hb_010872_050 Hb_016734_020--Hb_008206_080 Hb_004096_110 Hb_004096_110 Hb_016734_020--Hb_004096_110 Hb_002596_060 Hb_002596_060 Hb_016734_020--Hb_002596_060 Hb_000979_220 Hb_000979_220 Hb_016734_020--Hb_000979_220 Hb_027760_060 Hb_027760_060 Hb_016734_020--Hb_027760_060 Hb_000796_120 Hb_000796_120 Hb_002107_100--Hb_000796_120 Hb_000270_700 Hb_000270_700 Hb_002107_100--Hb_000270_700 Hb_000418_050 Hb_000418_050 Hb_002107_100--Hb_000418_050 Hb_104920_010 Hb_104920_010 Hb_002107_100--Hb_104920_010 Hb_000034_110 Hb_000034_110 Hb_002107_100--Hb_000034_110 Hb_003428_090 Hb_003428_090 Hb_002107_100--Hb_003428_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.2303 53.1211 88.1072 29.0768 24.9354 14.2173
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.5917 11.5353 27.9463 64.4067 36.0929

CAGE analysis