Hb_003839_010

Information

Type -
Description -
Location Contig3839: 10312-11749
Sequence    

Annotation

kegg
ID vvi:104879859
description serine/threonine-protein phosphatase 7 long form homolog
nr
ID XP_010942698.1
description PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
swissprot
ID Q9LNG5
description Serine/threonine-protein phosphatase 7 long form homolog OS=Arabidopsis thaliana GN=At1g48120 PE=2 SV=1
trembl
ID A5BJW1
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008825 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38681: 10895-11638
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003839_010 0.0 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
2 Hb_158445_020 0.1170135909 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001279_170 0.1336548495 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Jatropha curcas]
4 Hb_004787_080 0.1358057064 - - PREDICTED: microtubule-associated protein RP/EB family member 1B [Jatropha curcas]
5 Hb_000321_140 0.1397132718 - - RNA-binding protein, putative [Ricinus communis]
6 Hb_029388_010 0.144399914 transcription factor TF Family: C2C2-CO-like PREDICTED: zinc finger protein CONSTANS-LIKE 15-like [Jatropha curcas]
7 Hb_001009_280 0.1457713271 - - PREDICTED: telomere length regulation protein TEL2 homolog [Jatropha curcas]
8 Hb_172112_020 0.1459594273 - - PREDICTED: fumarylacetoacetase [Jatropha curcas]
9 Hb_001878_050 0.1475293785 - - PREDICTED: uncharacterized protein LOC105646110 isoform X3 [Jatropha curcas]
10 Hb_008054_040 0.1482306282 - - PREDICTED: cullin-4 [Jatropha curcas]
11 Hb_002055_020 0.1488751691 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
12 Hb_000359_130 0.1490407263 - - 4-hydroxyphenylpyruvate dioxygenase [Hevea brasiliensis]
13 Hb_011282_050 0.1509681684 - - PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like [Jatropha curcas]
14 Hb_000565_040 0.1515479862 - - RecName: Full=Superoxide dismutase [Mn], mitochondrial; Flags: Precursor [Hevea brasiliensis]
15 Hb_001172_140 0.1515726514 - - hypothetical protein POPTR_0014s17790g [Populus trichocarpa]
16 Hb_000023_350 0.1517383449 - - PREDICTED: probable folate-biopterin transporter 6 isoform X2 [Populus euphratica]
17 Hb_003528_050 0.1543973406 - - protein transporter, putative [Ricinus communis]
18 Hb_088144_020 0.1546106093 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 6-like isoform X1 [Jatropha curcas]
19 Hb_000229_050 0.1549796796 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
20 Hb_000979_220 0.1557049695 - - PREDICTED: uncharacterized protein LOC105634085 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003839_010 Hb_003839_010 Hb_158445_020 Hb_158445_020 Hb_003839_010--Hb_158445_020 Hb_001279_170 Hb_001279_170 Hb_003839_010--Hb_001279_170 Hb_004787_080 Hb_004787_080 Hb_003839_010--Hb_004787_080 Hb_000321_140 Hb_000321_140 Hb_003839_010--Hb_000321_140 Hb_029388_010 Hb_029388_010 Hb_003839_010--Hb_029388_010 Hb_001009_280 Hb_001009_280 Hb_003839_010--Hb_001009_280 Hb_008054_040 Hb_008054_040 Hb_158445_020--Hb_008054_040 Hb_001396_010 Hb_001396_010 Hb_158445_020--Hb_001396_010 Hb_000229_050 Hb_000229_050 Hb_158445_020--Hb_000229_050 Hb_016734_020 Hb_016734_020 Hb_158445_020--Hb_016734_020 Hb_002107_100 Hb_002107_100 Hb_158445_020--Hb_002107_100 Hb_000617_230 Hb_000617_230 Hb_001279_170--Hb_000617_230 Hb_001789_060 Hb_001789_060 Hb_001279_170--Hb_001789_060 Hb_000484_130 Hb_000484_130 Hb_001279_170--Hb_000484_130 Hb_000291_010 Hb_000291_010 Hb_001279_170--Hb_000291_010 Hb_001862_210 Hb_001862_210 Hb_001279_170--Hb_001862_210 Hb_002675_130 Hb_002675_130 Hb_001279_170--Hb_002675_130 Hb_002046_010 Hb_002046_010 Hb_004787_080--Hb_002046_010 Hb_004787_080--Hb_001009_280 Hb_000120_280 Hb_000120_280 Hb_004787_080--Hb_000120_280 Hb_004267_040 Hb_004267_040 Hb_004787_080--Hb_004267_040 Hb_000565_040 Hb_000565_040 Hb_004787_080--Hb_000565_040 Hb_183510_020 Hb_183510_020 Hb_004787_080--Hb_183510_020 Hb_002055_020 Hb_002055_020 Hb_000321_140--Hb_002055_020 Hb_000085_170 Hb_000085_170 Hb_000321_140--Hb_000085_170 Hb_000321_140--Hb_001009_280 Hb_000610_040 Hb_000610_040 Hb_000321_140--Hb_000610_040 Hb_000510_360 Hb_000510_360 Hb_000321_140--Hb_000510_360 Hb_000880_070 Hb_000880_070 Hb_000321_140--Hb_000880_070 Hb_001369_300 Hb_001369_300 Hb_029388_010--Hb_001369_300 Hb_011671_310 Hb_011671_310 Hb_029388_010--Hb_011671_310 Hb_005977_030 Hb_005977_030 Hb_029388_010--Hb_005977_030 Hb_001500_120 Hb_001500_120 Hb_029388_010--Hb_001500_120 Hb_000120_250 Hb_000120_250 Hb_029388_010--Hb_000120_250 Hb_029388_010--Hb_001789_060 Hb_001009_280--Hb_183510_020 Hb_001009_280--Hb_002055_020 Hb_001009_280--Hb_002046_010 Hb_001009_280--Hb_000617_230 Hb_027506_010 Hb_027506_010 Hb_001009_280--Hb_027506_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.526851 0.776613 1.3049 0.251809 0.528017 0.213338
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.469199 0.301964 0.498224 1.23751 0.554165

CAGE analysis