Hb_002107_100

Information

Type -
Description -
Location Contig2107: 68733-74109
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa018923mg
description hypothetical protein
nr
ID XP_012073743.1
description PREDICTED: la-related protein 1C-like isoform X3 [Jatropha curcas]
swissprot
ID Q94K80
description La-related protein 1C OS=Arabidopsis thaliana GN=LARP1C PE=1 SV=1
trembl
ID E6NTY6
description JHL20J20.1 protein OS=Jatropha curcas GN=JHL20J20.1 PE=4 SV=1
Gene Ontology
ID GO:0044424
description la-related protein 1c-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21810: 68761-73193 , PASA_asmbl_21811: 69652-69752 , PASA_asmbl_21812: 73418-74064
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002107_100 0.0 - - PREDICTED: la-related protein 1C-like isoform X3 [Jatropha curcas]
2 Hb_000796_120 0.075565972 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
3 Hb_000270_700 0.0797805985 - - PREDICTED: protease Do-like 9 [Populus euphratica]
4 Hb_000418_050 0.0805029809 - - PREDICTED: uncharacterized protein LOC105636892 [Jatropha curcas]
5 Hb_104920_010 0.0878460577 - - hypothetical protein VITISV_031859 [Vitis vinifera]
6 Hb_000034_110 0.088776266 - - sentrin/sumo-specific protease, putative [Ricinus communis]
7 Hb_003428_090 0.0887778454 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
8 Hb_000866_140 0.0937458602 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
9 Hb_009178_010 0.0969372629 - - PREDICTED: uncharacterized protein LOC105637474 [Jatropha curcas]
10 Hb_001009_120 0.0983950572 - - PREDICTED: transcription factor GTE10 isoform X2 [Jatropha curcas]
11 Hb_001133_090 0.099692325 - - hypothetical protein POPTR_0012s02680g [Populus trichocarpa]
12 Hb_003018_030 0.1004227801 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
13 Hb_002686_410 0.1008434398 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 48 kDa protein-like isoform X2 [Jatropha curcas]
14 Hb_000956_040 0.1033603524 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
15 Hb_000421_110 0.1048394536 - - PREDICTED: V-type proton ATPase subunit a1 isoform X2 [Jatropha curcas]
16 Hb_004526_010 0.1068711041 - - signal recognition particle receptor alpha subunit, putative [Ricinus communis]
17 Hb_003687_120 0.107185169 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
18 Hb_010775_010 0.1073586248 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
19 Hb_004319_050 0.107754853 - - PREDICTED: senescence-associated carboxylesterase 101-like [Populus euphratica]
20 Hb_001369_030 0.109056017 - - PREDICTED: ceramide kinase isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002107_100 Hb_002107_100 Hb_000796_120 Hb_000796_120 Hb_002107_100--Hb_000796_120 Hb_000270_700 Hb_000270_700 Hb_002107_100--Hb_000270_700 Hb_000418_050 Hb_000418_050 Hb_002107_100--Hb_000418_050 Hb_104920_010 Hb_104920_010 Hb_002107_100--Hb_104920_010 Hb_000034_110 Hb_000034_110 Hb_002107_100--Hb_000034_110 Hb_003428_090 Hb_003428_090 Hb_002107_100--Hb_003428_090 Hb_004319_050 Hb_004319_050 Hb_000796_120--Hb_004319_050 Hb_004526_010 Hb_004526_010 Hb_000796_120--Hb_004526_010 Hb_000796_120--Hb_000418_050 Hb_000261_280 Hb_000261_280 Hb_000796_120--Hb_000261_280 Hb_009178_010 Hb_009178_010 Hb_000796_120--Hb_009178_010 Hb_000270_700--Hb_000034_110 Hb_000270_700--Hb_000418_050 Hb_002686_410 Hb_002686_410 Hb_000270_700--Hb_002686_410 Hb_005885_030 Hb_005885_030 Hb_000270_700--Hb_005885_030 Hb_003725_010 Hb_003725_010 Hb_000270_700--Hb_003725_010 Hb_000421_110 Hb_000421_110 Hb_000270_700--Hb_000421_110 Hb_001133_090 Hb_001133_090 Hb_000418_050--Hb_001133_090 Hb_000418_050--Hb_000421_110 Hb_000418_050--Hb_005885_030 Hb_000418_050--Hb_000261_280 Hb_012799_150 Hb_012799_150 Hb_104920_010--Hb_012799_150 Hb_025787_010 Hb_025787_010 Hb_104920_010--Hb_025787_010 Hb_004117_270 Hb_004117_270 Hb_104920_010--Hb_004117_270 Hb_104920_010--Hb_000418_050 Hb_001369_030 Hb_001369_030 Hb_104920_010--Hb_001369_030 Hb_000956_040 Hb_000956_040 Hb_000034_110--Hb_000956_040 Hb_000260_760 Hb_000260_760 Hb_000034_110--Hb_000260_760 Hb_000034_110--Hb_009178_010 Hb_000034_110--Hb_002686_410 Hb_005403_010 Hb_005403_010 Hb_000034_110--Hb_005403_010 Hb_003687_120 Hb_003687_120 Hb_003428_090--Hb_003687_120 Hb_060094_010 Hb_060094_010 Hb_003428_090--Hb_060094_010 Hb_000866_140 Hb_000866_140 Hb_003428_090--Hb_000866_140 Hb_000156_090 Hb_000156_090 Hb_003428_090--Hb_000156_090 Hb_002686_150 Hb_002686_150 Hb_003428_090--Hb_002686_150 Hb_000890_160 Hb_000890_160 Hb_003428_090--Hb_000890_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.91337 10.2669 12.6109 5.40698 3.57609 2.2553
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.89902 2.1334 2.02653 6.31588 4.79576

CAGE analysis