Hb_001133_090

Information

Type -
Description -
Location Contig1133: 165296-172881
Sequence    

Annotation

kegg
ID pop:POPTR_0012s02680g
description POPTRDRAFT_422075; hypothetical protein
nr
ID XP_002318446.2
description hypothetical protein POPTR_0012s02680g [Populus trichocarpa]
swissprot
ID Q9SFX2
description U-box domain-containing protein 43 OS=Arabidopsis thaliana GN=PUB43 PE=2 SV=1
trembl
ID B9I201
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s02680g PE=4 SV=2
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 44-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03970: 167456-167936 , PASA_asmbl_03971: 168663-169889 , PASA_asmbl_03972: 169931-170842
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001133_090 0.0 - - hypothetical protein POPTR_0012s02680g [Populus trichocarpa]
2 Hb_000421_110 0.0575553921 - - PREDICTED: V-type proton ATPase subunit a1 isoform X2 [Jatropha curcas]
3 Hb_000418_050 0.064890977 - - PREDICTED: uncharacterized protein LOC105636892 [Jatropha curcas]
4 Hb_007031_040 0.0705692885 transcription factor TF Family: bZIP PREDICTED: bZIP transcription factor 17-like [Jatropha curcas]
5 Hb_005885_030 0.0713637816 desease resistance Gene Name: TIR PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
6 Hb_000270_700 0.0724089287 - - PREDICTED: protease Do-like 9 [Populus euphratica]
7 Hb_010775_010 0.0762837303 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
8 Hb_004800_130 0.0807864237 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
9 Hb_001205_180 0.0897903649 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
10 Hb_002686_410 0.0914467789 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 48 kDa protein-like isoform X2 [Jatropha curcas]
11 Hb_002609_190 0.0933871743 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
12 Hb_001911_010 0.0939077638 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
13 Hb_006794_020 0.0943511385 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
14 Hb_002259_110 0.0979610358 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
15 Hb_002107_100 0.099692325 - - PREDICTED: la-related protein 1C-like isoform X3 [Jatropha curcas]
16 Hb_000270_110 0.1008978901 - - PREDICTED: calcium-dependent protein kinase 10 [Jatropha curcas]
17 Hb_000796_120 0.1015525378 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
18 Hb_152910_010 0.1020025088 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
19 Hb_000034_110 0.1022955359 - - sentrin/sumo-specific protease, putative [Ricinus communis]
20 Hb_012305_140 0.1029364591 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001133_090 Hb_001133_090 Hb_000421_110 Hb_000421_110 Hb_001133_090--Hb_000421_110 Hb_000418_050 Hb_000418_050 Hb_001133_090--Hb_000418_050 Hb_007031_040 Hb_007031_040 Hb_001133_090--Hb_007031_040 Hb_005885_030 Hb_005885_030 Hb_001133_090--Hb_005885_030 Hb_000270_700 Hb_000270_700 Hb_001133_090--Hb_000270_700 Hb_010775_010 Hb_010775_010 Hb_001133_090--Hb_010775_010 Hb_000421_110--Hb_007031_040 Hb_000421_110--Hb_000418_050 Hb_000421_110--Hb_000270_700 Hb_001911_010 Hb_001911_010 Hb_000421_110--Hb_001911_010 Hb_004319_050 Hb_004319_050 Hb_000421_110--Hb_004319_050 Hb_000418_050--Hb_000270_700 Hb_000418_050--Hb_005885_030 Hb_000261_280 Hb_000261_280 Hb_000418_050--Hb_000261_280 Hb_002107_100 Hb_002107_100 Hb_000418_050--Hb_002107_100 Hb_007031_040--Hb_001911_010 Hb_000270_110 Hb_000270_110 Hb_007031_040--Hb_000270_110 Hb_159295_010 Hb_159295_010 Hb_007031_040--Hb_159295_010 Hb_001410_130 Hb_001410_130 Hb_007031_040--Hb_001410_130 Hb_005885_030--Hb_010775_010 Hb_002686_410 Hb_002686_410 Hb_005885_030--Hb_002686_410 Hb_005885_030--Hb_000270_700 Hb_002248_120 Hb_002248_120 Hb_005885_030--Hb_002248_120 Hb_006794_020 Hb_006794_020 Hb_005885_030--Hb_006794_020 Hb_000034_110 Hb_000034_110 Hb_000270_700--Hb_000034_110 Hb_000270_700--Hb_002686_410 Hb_003725_010 Hb_003725_010 Hb_000270_700--Hb_003725_010 Hb_013358_060 Hb_013358_060 Hb_010775_010--Hb_013358_060 Hb_010775_010--Hb_006794_020 Hb_001488_210 Hb_001488_210 Hb_010775_010--Hb_001488_210 Hb_010775_010--Hb_002686_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.51703 6.62939 5.92882 3.69037 1.89443 1.42762
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.991298 0.468066 0.986203 3.29078 2.96686

CAGE analysis