Hb_104920_010

Information

Type -
Description -
Location Contig104920: 297-2173
Sequence    

Annotation

kegg
ID tcc:TCM_034270
description Basic-leucine zipper transcription factor family protein, putative
nr
ID CAN73672.1
description hypothetical protein VITISV_031859 [Vitis vinifera]
swissprot
ID Q84JK2
description Protein FD OS=Arabidopsis thaliana GN=FD PE=1 SV=1
trembl
ID A5AQ68
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031859 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01679: 590-694 , PASA_asmbl_01680: 695-1195
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_104920_010 0.0 - - hypothetical protein VITISV_031859 [Vitis vinifera]
2 Hb_002107_100 0.0878460577 - - PREDICTED: la-related protein 1C-like isoform X3 [Jatropha curcas]
3 Hb_012799_150 0.0994100731 - - PREDICTED: LOW QUALITY PROTEIN: methyl-CpG-binding domain-containing protein 13 [Jatropha curcas]
4 Hb_025787_010 0.1002976909 - - PREDICTED: histone H1.2-like [Jatropha curcas]
5 Hb_004117_270 0.1080573184 - - -
6 Hb_000418_050 0.1084794866 - - PREDICTED: uncharacterized protein LOC105636892 [Jatropha curcas]
7 Hb_001369_030 0.1098955128 - - PREDICTED: ceramide kinase isoform X1 [Jatropha curcas]
8 Hb_003725_010 0.1102092151 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
9 Hb_001729_020 0.1106075481 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
10 Hb_000270_700 0.1118078915 - - PREDICTED: protease Do-like 9 [Populus euphratica]
11 Hb_000161_240 0.1121682039 - - PREDICTED: ion channel DMI1-like isoform X1 [Jatropha curcas]
12 Hb_015807_080 0.1146305224 - - PREDICTED: helicase protein MOM1-like [Jatropha curcas]
13 Hb_002686_150 0.1151143156 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
14 Hb_008120_040 0.1183830632 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
15 Hb_000796_120 0.1216086519 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
16 Hb_003428_090 0.1224614092 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
17 Hb_017914_010 0.1231676586 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
18 Hb_000956_040 0.1236066881 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
19 Hb_061256_010 0.1237942092 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
20 Hb_001009_120 0.1239436878 - - PREDICTED: transcription factor GTE10 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_104920_010 Hb_104920_010 Hb_002107_100 Hb_002107_100 Hb_104920_010--Hb_002107_100 Hb_012799_150 Hb_012799_150 Hb_104920_010--Hb_012799_150 Hb_025787_010 Hb_025787_010 Hb_104920_010--Hb_025787_010 Hb_004117_270 Hb_004117_270 Hb_104920_010--Hb_004117_270 Hb_000418_050 Hb_000418_050 Hb_104920_010--Hb_000418_050 Hb_001369_030 Hb_001369_030 Hb_104920_010--Hb_001369_030 Hb_000796_120 Hb_000796_120 Hb_002107_100--Hb_000796_120 Hb_000270_700 Hb_000270_700 Hb_002107_100--Hb_000270_700 Hb_002107_100--Hb_000418_050 Hb_000034_110 Hb_000034_110 Hb_002107_100--Hb_000034_110 Hb_003428_090 Hb_003428_090 Hb_002107_100--Hb_003428_090 Hb_003725_010 Hb_003725_010 Hb_012799_150--Hb_003725_010 Hb_172979_010 Hb_172979_010 Hb_012799_150--Hb_172979_010 Hb_003417_030 Hb_003417_030 Hb_012799_150--Hb_003417_030 Hb_003687_120 Hb_003687_120 Hb_012799_150--Hb_003687_120 Hb_012799_150--Hb_025787_010 Hb_025787_010--Hb_004117_270 Hb_025787_010--Hb_003417_030 Hb_000161_240 Hb_000161_240 Hb_025787_010--Hb_000161_240 Hb_054865_050 Hb_054865_050 Hb_025787_010--Hb_054865_050 Hb_000260_160 Hb_000260_160 Hb_004117_270--Hb_000260_160 Hb_015807_080 Hb_015807_080 Hb_004117_270--Hb_015807_080 Hb_004117_270--Hb_012799_150 Hb_008120_040 Hb_008120_040 Hb_004117_270--Hb_008120_040 Hb_000418_050--Hb_000270_700 Hb_001133_090 Hb_001133_090 Hb_000418_050--Hb_001133_090 Hb_000421_110 Hb_000421_110 Hb_000418_050--Hb_000421_110 Hb_005885_030 Hb_005885_030 Hb_000418_050--Hb_005885_030 Hb_000261_280 Hb_000261_280 Hb_000418_050--Hb_000261_280 Hb_000086_430 Hb_000086_430 Hb_001369_030--Hb_000086_430 Hb_000212_300 Hb_000212_300 Hb_001369_030--Hb_000212_300 Hb_000062_360 Hb_000062_360 Hb_001369_030--Hb_000062_360 Hb_001009_120 Hb_001009_120 Hb_001369_030--Hb_001009_120 Hb_004267_060 Hb_004267_060 Hb_001369_030--Hb_004267_060 Hb_000836_540 Hb_000836_540 Hb_001369_030--Hb_000836_540
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.625026 3.50916 4.9115 1.53916 0.734311 0.482153
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.02882 0.781443 0.93957 1.81877 2.14967

CAGE analysis