Hb_025787_010

Information

Type -
Description -
Location Contig25787: 7022-9539
Sequence    

Annotation

kegg
ID rcu:RCOM_0215910
description histone h1/h5, putative
nr
ID XP_012087736.1
description PREDICTED: histone H1.2-like [Jatropha curcas]
swissprot
ID P26569
description Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 PE=1 SV=1
trembl
ID A0A067JX68
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25511 PE=3 SV=1
Gene Ontology
ID GO:0043229
description histone h1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26775: 7097-9091 , PASA_asmbl_26776: 7950-8304
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025787_010 0.0 - - PREDICTED: histone H1.2-like [Jatropha curcas]
2 Hb_004117_270 0.0797502125 - - -
3 Hb_104920_010 0.1002976909 - - hypothetical protein VITISV_031859 [Vitis vinifera]
4 Hb_012799_150 0.1035531978 - - PREDICTED: LOW QUALITY PROTEIN: methyl-CpG-binding domain-containing protein 13 [Jatropha curcas]
5 Hb_003417_030 0.1230335678 - - PREDICTED: sister chromatid cohesion 1 protein 2 isoform X1 [Jatropha curcas]
6 Hb_000161_240 0.1238458712 - - PREDICTED: ion channel DMI1-like isoform X1 [Jatropha curcas]
7 Hb_054865_050 0.1325383831 - - calcium-dependent protein kinase, putative [Ricinus communis]
8 Hb_001729_020 0.134471278 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
9 Hb_017914_010 0.1345920185 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
10 Hb_007576_140 0.1365835007 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis]
11 Hb_003725_010 0.1369998096 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
12 Hb_024714_070 0.1377729653 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
13 Hb_015807_080 0.1391519519 - - PREDICTED: helicase protein MOM1-like [Jatropha curcas]
14 Hb_000260_160 0.1448776229 transcription factor TF Family: GNAT ATP binding protein, putative [Ricinus communis]
15 Hb_000979_140 0.1458082667 - - kinase family protein [Populus trichocarpa]
16 Hb_172979_010 0.1478203993 - - PREDICTED: protein disulfide-isomerase SCO2 [Jatropha curcas]
17 Hb_000589_170 0.148013585 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
18 Hb_008120_040 0.1487984406 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
19 Hb_017193_010 0.1500628704 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
20 Hb_012545_030 0.1504230147 - - Polyadenylate-binding protein RBP47C [Glycine soja]

Gene co-expression network

sample Hb_025787_010 Hb_025787_010 Hb_004117_270 Hb_004117_270 Hb_025787_010--Hb_004117_270 Hb_104920_010 Hb_104920_010 Hb_025787_010--Hb_104920_010 Hb_012799_150 Hb_012799_150 Hb_025787_010--Hb_012799_150 Hb_003417_030 Hb_003417_030 Hb_025787_010--Hb_003417_030 Hb_000161_240 Hb_000161_240 Hb_025787_010--Hb_000161_240 Hb_054865_050 Hb_054865_050 Hb_025787_010--Hb_054865_050 Hb_000260_160 Hb_000260_160 Hb_004117_270--Hb_000260_160 Hb_015807_080 Hb_015807_080 Hb_004117_270--Hb_015807_080 Hb_004117_270--Hb_012799_150 Hb_008120_040 Hb_008120_040 Hb_004117_270--Hb_008120_040 Hb_004117_270--Hb_104920_010 Hb_002107_100 Hb_002107_100 Hb_104920_010--Hb_002107_100 Hb_104920_010--Hb_012799_150 Hb_000418_050 Hb_000418_050 Hb_104920_010--Hb_000418_050 Hb_001369_030 Hb_001369_030 Hb_104920_010--Hb_001369_030 Hb_003725_010 Hb_003725_010 Hb_012799_150--Hb_003725_010 Hb_172979_010 Hb_172979_010 Hb_012799_150--Hb_172979_010 Hb_012799_150--Hb_003417_030 Hb_003687_120 Hb_003687_120 Hb_012799_150--Hb_003687_120 Hb_017914_010 Hb_017914_010 Hb_003417_030--Hb_017914_010 Hb_024714_070 Hb_024714_070 Hb_003417_030--Hb_024714_070 Hb_003417_030--Hb_003725_010 Hb_003428_090 Hb_003428_090 Hb_003417_030--Hb_003428_090 Hb_121089_020 Hb_121089_020 Hb_003417_030--Hb_121089_020 Hb_000007_410 Hb_000007_410 Hb_000161_240--Hb_000007_410 Hb_000161_240--Hb_104920_010 Hb_000161_240--Hb_012799_150 Hb_000161_240--Hb_004117_270 Hb_158445_020 Hb_158445_020 Hb_000161_240--Hb_158445_020 Hb_000258_090 Hb_000258_090 Hb_000161_240--Hb_000258_090 Hb_009449_100 Hb_009449_100 Hb_054865_050--Hb_009449_100 Hb_005064_070 Hb_005064_070 Hb_054865_050--Hb_005064_070 Hb_002249_170 Hb_002249_170 Hb_054865_050--Hb_002249_170 Hb_000375_060 Hb_000375_060 Hb_054865_050--Hb_000375_060 Hb_001514_240 Hb_001514_240 Hb_054865_050--Hb_001514_240 Hb_000098_180 Hb_000098_180 Hb_054865_050--Hb_000098_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.74813 25.1755 39.7805 11.1003 2.5834 2.46314
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.73159 8.69559 5.86768 19.7697 18.7801

CAGE analysis