Hb_000258_090

Information

Type -
Description -
Location Contig258: 77971-82784
Sequence    

Annotation

kegg
ID rcu:RCOM_0641960
description nucleic acid binding protein, putative
nr
ID XP_012080768.1
description PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
swissprot
ID P58223
description KH domain-containing protein At4g18375 OS=Arabidopsis thaliana GN=At4g18375 PE=2 SV=1
trembl
ID A0A067LMB7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18179 PE=4 SV=1
Gene Ontology
ID GO:0003723
description kh domain-containing protein at4g18375

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26796: 81608-82759
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000258_090 0.0 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
2 Hb_000007_410 0.091153834 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 isoform X2 [Populus euphratica]
3 Hb_003964_110 0.0922400614 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
4 Hb_027760_060 0.0977764808 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
5 Hb_158845_060 0.1011333054 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]
6 Hb_000599_360 0.1054145352 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
7 Hb_005504_030 0.1085312202 - - PREDICTED: somatic embryogenesis receptor kinase 2-like [Pyrus x bretschneideri]
8 Hb_002276_040 0.1117685854 - - PREDICTED: sodium-coupled neutral amino acid transporter 3-like [Jatropha curcas]
9 Hb_000015_200 0.1159740326 - - PREDICTED: LOW QUALITY PROTEIN: heat shock cognate 70 kDa protein 2-like [Jatropha curcas]
10 Hb_002317_010 0.1166332461 - - PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Jatropha curcas]
11 Hb_000345_320 0.1169459075 transcription factor TF Family: MYB-related PREDICTED: protein ALWAYS EARLY 2-like isoform X1 [Jatropha curcas]
12 Hb_010872_050 0.1171553754 - - hypothetical protein B456_007G078100 [Gossypium raimondii]
13 Hb_000260_400 0.1177685132 - - PREDICTED: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Jatropha curcas]
14 Hb_000072_020 0.1191174099 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
15 Hb_000248_100 0.119920466 - - PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]
16 Hb_005854_040 0.1206072251 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002235_310 0.1213289364 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
18 Hb_000205_250 0.1218384744 - - PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]
19 Hb_000271_120 0.122514905 - - PREDICTED: U-box domain-containing protein 13-like [Nelumbo nucifera]
20 Hb_001504_060 0.1226315593 - - PREDICTED: nuclear pore complex protein NUP93A-like [Jatropha curcas]

Gene co-expression network

sample Hb_000258_090 Hb_000258_090 Hb_000007_410 Hb_000007_410 Hb_000258_090--Hb_000007_410 Hb_003964_110 Hb_003964_110 Hb_000258_090--Hb_003964_110 Hb_027760_060 Hb_027760_060 Hb_000258_090--Hb_027760_060 Hb_158845_060 Hb_158845_060 Hb_000258_090--Hb_158845_060 Hb_000599_360 Hb_000599_360 Hb_000258_090--Hb_000599_360 Hb_005504_030 Hb_005504_030 Hb_000258_090--Hb_005504_030 Hb_004586_090 Hb_004586_090 Hb_000007_410--Hb_004586_090 Hb_000015_200 Hb_000015_200 Hb_000007_410--Hb_000015_200 Hb_000271_120 Hb_000271_120 Hb_000007_410--Hb_000271_120 Hb_000007_410--Hb_003964_110 Hb_000007_410--Hb_000599_360 Hb_003964_110--Hb_158845_060 Hb_008165_020 Hb_008165_020 Hb_003964_110--Hb_008165_020 Hb_000227_320 Hb_000227_320 Hb_003964_110--Hb_000227_320 Hb_000331_100 Hb_000331_100 Hb_003964_110--Hb_000331_100 Hb_001414_010 Hb_001414_010 Hb_003964_110--Hb_001414_010 Hb_000665_260 Hb_000665_260 Hb_003964_110--Hb_000665_260 Hb_000029_170 Hb_000029_170 Hb_027760_060--Hb_000029_170 Hb_005074_020 Hb_005074_020 Hb_027760_060--Hb_005074_020 Hb_002317_010 Hb_002317_010 Hb_027760_060--Hb_002317_010 Hb_008289_040 Hb_008289_040 Hb_027760_060--Hb_008289_040 Hb_001646_020 Hb_001646_020 Hb_027760_060--Hb_001646_020 Hb_002445_030 Hb_002445_030 Hb_027760_060--Hb_002445_030 Hb_158845_060--Hb_000599_360 Hb_000297_030 Hb_000297_030 Hb_158845_060--Hb_000297_030 Hb_080147_050 Hb_080147_050 Hb_158845_060--Hb_080147_050 Hb_001085_080 Hb_001085_080 Hb_158845_060--Hb_001085_080 Hb_021977_010 Hb_021977_010 Hb_158845_060--Hb_021977_010 Hb_000599_360--Hb_021977_010 Hb_000599_360--Hb_003964_110 Hb_160608_010 Hb_160608_010 Hb_000599_360--Hb_160608_010 Hb_005741_040 Hb_005741_040 Hb_000599_360--Hb_005741_040 Hb_000599_360--Hb_080147_050 Hb_000009_140 Hb_000009_140 Hb_005504_030--Hb_000009_140 Hb_004586_240 Hb_004586_240 Hb_005504_030--Hb_004586_240 Hb_033363_010 Hb_033363_010 Hb_005504_030--Hb_033363_010 Hb_000072_020 Hb_000072_020 Hb_005504_030--Hb_000072_020 Hb_010068_070 Hb_010068_070 Hb_005504_030--Hb_010068_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.99365 4.86913 5.44269 4.87098 1.5684 0.891112
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.17408 1.00307 1.76297 6.85301 3.62287

CAGE analysis