Hb_003417_030

Information

Type -
Description -
Location Contig3417: 31993-39764
Sequence    

Annotation

kegg
ID rcu:RCOM_1678520
description Sister chromatid cohesion 1 protein, putative
nr
ID XP_012070826.1
description PREDICTED: sister chromatid cohesion 1 protein 2 isoform X1 [Jatropha curcas]
swissprot
ID Q9FQ20
description Sister chromatid cohesion 1 protein 2 OS=Arabidopsis thaliana GN=SYN2 PE=2 SV=2
trembl
ID A0A067LD59
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10157 PE=4 SV=1
Gene Ontology
ID GO:0000228
description sister chromatid cohesion 1 protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35709: 31919-32889 , PASA_asmbl_35710: 32366-33489 , PASA_asmbl_35711: 33616-35938 , PASA_asmbl_35712: 35939-36160 , PASA_asmbl_35713: 36224-37400 , PASA_asmbl_35714: 36224-37146
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003417_030 0.0 - - PREDICTED: sister chromatid cohesion 1 protein 2 isoform X1 [Jatropha curcas]
2 Hb_017914_010 0.0814295038 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
3 Hb_024714_070 0.0883311013 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
4 Hb_003725_010 0.0942801961 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
5 Hb_012799_150 0.1029554328 - - PREDICTED: LOW QUALITY PROTEIN: methyl-CpG-binding domain-containing protein 13 [Jatropha curcas]
6 Hb_003428_090 0.1172371946 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
7 Hb_121089_020 0.1215857258 - - PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]
8 Hb_001159_020 0.1229840712 - - -
9 Hb_025787_010 0.1230335678 - - PREDICTED: histone H1.2-like [Jatropha curcas]
10 Hb_000375_060 0.1240793488 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Jatropha curcas]
11 Hb_004117_270 0.125678916 - - -
12 Hb_110567_010 0.1269015133 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic-like [Jatropha curcas]
13 Hb_002387_040 0.1297259246 - - protein transporter, putative [Ricinus communis]
14 Hb_001729_020 0.1307907799 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
15 Hb_013358_060 0.1316274935 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
16 Hb_000094_150 0.1339778198 - - -
17 Hb_000270_700 0.1355111402 - - PREDICTED: protease Do-like 9 [Populus euphratica]
18 Hb_005288_050 0.1360612539 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR4 [Jatropha curcas]
19 Hb_002804_010 0.1360888554 - - PREDICTED: U-box domain-containing protein 33-like [Jatropha curcas]
20 Hb_000699_210 0.1370800565 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_003417_030 Hb_003417_030 Hb_017914_010 Hb_017914_010 Hb_003417_030--Hb_017914_010 Hb_024714_070 Hb_024714_070 Hb_003417_030--Hb_024714_070 Hb_003725_010 Hb_003725_010 Hb_003417_030--Hb_003725_010 Hb_012799_150 Hb_012799_150 Hb_003417_030--Hb_012799_150 Hb_003428_090 Hb_003428_090 Hb_003417_030--Hb_003428_090 Hb_121089_020 Hb_121089_020 Hb_003417_030--Hb_121089_020 Hb_017914_010--Hb_024714_070 Hb_017914_010--Hb_003725_010 Hb_013358_060 Hb_013358_060 Hb_017914_010--Hb_013358_060 Hb_000270_700 Hb_000270_700 Hb_017914_010--Hb_000270_700 Hb_010775_010 Hb_010775_010 Hb_017914_010--Hb_010775_010 Hb_024714_070--Hb_003725_010 Hb_002387_040 Hb_002387_040 Hb_024714_070--Hb_002387_040 Hb_000015_090 Hb_000015_090 Hb_024714_070--Hb_000015_090 Hb_024714_070--Hb_013358_060 Hb_003725_010--Hb_013358_060 Hb_003725_010--Hb_000270_700 Hb_003725_010--Hb_012799_150 Hb_003725_010--Hb_000015_090 Hb_172979_010 Hb_172979_010 Hb_012799_150--Hb_172979_010 Hb_104920_010 Hb_104920_010 Hb_012799_150--Hb_104920_010 Hb_003687_120 Hb_003687_120 Hb_012799_150--Hb_003687_120 Hb_025787_010 Hb_025787_010 Hb_012799_150--Hb_025787_010 Hb_003428_090--Hb_003687_120 Hb_060094_010 Hb_060094_010 Hb_003428_090--Hb_060094_010 Hb_000866_140 Hb_000866_140 Hb_003428_090--Hb_000866_140 Hb_000156_090 Hb_000156_090 Hb_003428_090--Hb_000156_090 Hb_002686_150 Hb_002686_150 Hb_003428_090--Hb_002686_150 Hb_000890_160 Hb_000890_160 Hb_003428_090--Hb_000890_160 Hb_002900_120 Hb_002900_120 Hb_121089_020--Hb_002900_120 Hb_121089_020--Hb_024714_070 Hb_121089_020--Hb_000015_090 Hb_007416_260 Hb_007416_260 Hb_121089_020--Hb_007416_260 Hb_000711_010 Hb_000711_010 Hb_121089_020--Hb_000711_010 Hb_002804_010 Hb_002804_010 Hb_121089_020--Hb_002804_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.447839 3.58736 3.292 1.83288 0.562784 0.407475
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.555227 1.57289 0.476886 2.51154 2.04753

CAGE analysis